U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Strump Strumpellin [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39766, updated on 9-Dec-2024

    Summary

    Official Symbol
    Strumpprovided by FlyBase
    Official Full Name
    Strumpellinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0036571
    Locus tag
    Dmel_CG12272
    See related
    AllianceGenome:FB:FBgn0036571
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG12272; Dmel\CG12272; p118; strump
    Summary
    Involved in nuclear envelope budding and positive regulation of cell adhesion. Located in nucleoplasm. Part of WASH complex. Colocalizes with nuclear envelope. Is expressed in adult head. Human ortholog(s) of this gene implicated in Ritscher-Schinzel syndrome 1 and hereditary spastic paraplegia 8. Orthologous to human WASHC5 (WASH complex subunit 5). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Strump in Genome Data Viewer
    Location:
    72D8-72D8; 3-44 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (16122002..16126052)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (16115102..16119152)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Zinc-finger protein at 72D Neighboring gene TBP-associated factor 4 Neighboring gene Phosphoglucose mutase 1 Neighboring gene Signal sequence receptor beta Neighboring gene TRAPP subunit 20

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in actin filament polymerization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in endosome fission IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in endosome organization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in nuclear envelope budding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of cell adhesion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of actin nucleation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    part_of WASH complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of WASH complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of WASH complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of WASH complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    is_active_in endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    colocalizes_with nuclear envelope IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    strumpellin
    Names
    CG12272-PA
    CG12272-PB
    CG12272-PC
    Strump-PA
    Strump-PB
    Strump-PC

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      16122002..16126052
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001169983.2NP_001163454.1  strumpellin, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001163454.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0AVW2, D3DMJ6, Q9VUY8
      Conserved Domains (1) summary
      pfam10266
      Location:221132
      Strumpellin; Hereditary spastic paraplegia protein strumpellin
    2. NM_140583.4NP_648840.1  strumpellin, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648840.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0AVW2, D3DMJ6, Q9VUY8
      Related
      FBpp0075208
      Conserved Domains (1) summary
      pfam10266
      Location:221132
      Strumpellin; Hereditary spastic paraplegia protein strumpellin
    3. NM_001275000.1NP_001261929.1  strumpellin, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261929.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PCR4
      Conserved Domains (1) summary
      pfam10266
      Location:221108
      Strumpellin; Hereditary spastic paraplegia protein strumpellin