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    Tceanc2 transcription elongation factor A (SII) N-terminal and central domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 66526, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tceanc2provided by MGI
    Official Full Name
    transcription elongation factor A (SII) N-terminal and central domain containing 2provided by MGI
    Primary source
    MGI:MGI:1913776
    See related
    Ensembl:ENSMUSG00000028619 AllianceGenome:MGI:1913776
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tdeanc2; 2210010B22Rik; 2210012G02Rik; 6330404A07Rik
    Summary
    Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in central nervous system and retina. Orthologous to human TCEANC2 (transcription elongation factor A N-terminal and central domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in CNS E18 (RPKM 2.4), testis adult (RPKM 2.4) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Tceanc2 in Genome Data Viewer
    Location:
    4 C7; 4 50.07 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (106991352..107035563, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (107134162..107178366, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1035 Neighboring gene mitochondrial ribosomal protein L37 Neighboring gene cytochrome b5 reductase-like Neighboring gene CUB domain containing protein 2 Neighboring gene predicted gene 12802 Neighboring gene STARR-positive B cell enhancer ABC_E4641 Neighboring gene transmembrane protein 59 Neighboring gene low density lipoprotein receptor class A domain containing 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    transcription elongation factor A N-terminal and central domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025617.2NP_079893.1  transcription elongation factor A N-terminal and central domain-containing protein 2

      See identical proteins and their annotated locations for NP_079893.1

      Status: VALIDATED

      Source sequence(s)
      AL645723
      Consensus CDS
      CCDS18431.1
      UniProtKB/Swiss-Prot
      Q8R2M0, Q9CZZ2, Q9D7X9
      UniProtKB/TrEMBL
      D3YXQ1
      Related
      ENSMUSP00000059741.4, ENSMUST00000057043.10
      Conserved Domains (1) summary
      cd00183
      Location:38111
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      106991352..107035563 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006503274.4XP_006503337.1  transcription elongation factor A N-terminal and central domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006503337.1

      UniProtKB/Swiss-Prot
      Q8R2M0, Q9CZZ2, Q9D7X9
      UniProtKB/TrEMBL
      D3YXQ1
      Conserved Domains (1) summary
      cd00183
      Location:38111
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme