U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    snx5.S sorting nexin 5 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 399003, updated on 4-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    snx5.S
    Official Full Name
    sorting nexin 5 S homeolog
    Primary source
    Xenbase:XB-GENE-947023
    Locus tag
    XELAEV_18028868mg
    See related
    EnsemblRapid:ENSXLAG00005025553 AllianceGenome:Xenbase:XB-GENE-947023
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    snx5
    Summary
    Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within intracellular protein transport and pinocytosis. Orthologous to human SNX5 (sorting nexin 5). [provided by Alliance of Genome Resources, Jan 2025]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See snx5.S in Genome Data Viewer
    Location:
    chromosome: 5S
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (30069041..30109536, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (30141704..30182220, complement)

    Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene anaphase promoting complex subunit 1 S homeolog Neighboring gene ribosome binding protein 1 S homeolog Neighboring gene mitochondrial genome maintenance exonuclease 1 S homeolog Neighboring gene ovo like zinc finger 2 S homeolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC68551

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pinocytosis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    sorting nexin 5 S homeolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001090114.1 → NP_001083583.1  sorting nexin 5 S homeolog

      See identical proteins and their annotated locations for NP_001083583.1

      Status: PROVISIONAL

      Source sequence(s)
      BC061649
      UniProtKB/TrEMBL
      A0A974CWH9, Q6P7J4
      Related
      ENSXLAP00005076319.1, ENSXLAT00005077910.1
      Conserved Domains (2) summary
      cd07663
      Location:181 → 398
      BAR_SNX5; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5
      cl02563
      Location:25 → 165
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      30069041..30109536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041563935.1 → XP_041419869.1  sorting nexin 5 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8G1U3, A0A974CR78, A0A974CWH9
      Related
      ENSXLAP00005076459.1, ENSXLAT00005078050.1
      Conserved Domains (2) summary
      cd07663
      Location:199 → 416
      BAR_SNX5; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5
      cl02563
      Location:43 → 183
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials