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    SLC7A14-AS1 SLC7A14 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101928583, updated on 10-Dec-2024

    Summary

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    Official Symbol
    SLC7A14-AS1provided by HGNC
    Official Full Name
    SLC7A14 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:54092
    See related
    Ensembl:ENSG00000285051 AllianceGenome:HGNC:54092
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in brain (RPKM 14.6) and adrenal (RPKM 0.7) See more
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    Genomic context

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    See SLC7A14-AS1 in Genome Data Viewer
    Location:
    3q26.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (170467285..170755205)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (173251590..173539539)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (170185073..170472994)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14885 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14886 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14887 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:170079595-170080095 Neighboring gene MPRA-validated peak4917 silencer Neighboring gene SKI like proto-oncogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:170136404-170137356 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:170143143-170143644 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:170143645-170144144 Neighboring gene microRNA 6828 Neighboring gene claudin 11 Neighboring gene solute carrier family 7 member 14 Neighboring gene keratin 8 pseudogene 13 Neighboring gene Sharpr-MPRA regulatory region 6075 Neighboring gene MPRA-validated peak4918 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20804 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20805 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20806 Neighboring gene NANOG hESC enhancer GRCh37_chr3:170395666-170396167 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:170399438-170400156 Neighboring gene ribosomal protein L28 pseudogene 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:170406280-170406852 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:170406853-170407425 Neighboring gene uncharacterized LOC124906302 Neighboring gene Sharpr-MPRA regulatory region 4779 Neighboring gene uncharacterized LOC105374211 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:170535382-170535959 Neighboring gene NANOG hESC enhancer GRCh37_chr3:170553092-170553655 Neighboring gene MPRA-validated peak4920 silencer Neighboring gene RNY5 pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Potential readthrough

    Included gene: CLDN11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135555.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC026316, BC039437, BC042089, HY157714

    2. NR_135556.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC039437
      Related
      ENST00000480067.1

    3. NR_135557.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC008041

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      170467285..170755205
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      173251590..173539539
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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