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    LOC100506929 uncharacterized LOC100506929 [ Homo sapiens (human) ]

    Gene ID: 100506929, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC100506929
    Gene description
    uncharacterized LOC100506929
    See related
    Ensembl:ENSG00000230015
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 4.5) See more
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    Genomic context

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    See LOC100506929 in Genome Data Viewer
    Location:
    1q43
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (240739147..240743650, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (240150526..240155026, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (240902447..240906950, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ferredoxin 2 pseudogene Neighboring gene uncharacterized LOC105373228 Neighboring gene Sharpr-MPRA regulatory region 3663 Neighboring gene THAP domain containing 12 pseudogene 8 Neighboring gene uncharacterized LOC124904602 Neighboring gene regulator of G protein signaling 7 Neighboring gene riboflavin kinase pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. GWAS of longevity in CHARGE consortium confirms APOE and FOXO3 candidacy. Broer L, et al. J Gerontol A Biol Sci Med Sci, 2015 Jan. PMID 25199915, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    GWAS of Longevity in CHARGE Consortium Confirms APOE and FOXO3 Candidacy.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188400.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL365184

    2. NR_188401.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL365184

    3. NR_188402.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL365184

    4. NR_188403.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL365184
      Related
      ENST00000817151.1

    5. NR_188404.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL365184

    6. NR_188405.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL365184

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      240739147..240743650 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      240150526..240155026 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials