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    LINC02397 long intergenic non-protein coding RNA 2397 [ Homo sapiens (human) ]

    Gene ID: 100507616, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02397provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2397provided by HGNC
    Primary source
    HGNC:HGNC:53323
    See related
    AllianceGenome:HGNC:53323
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in lymph node (RPKM 3.8), spleen (RPKM 2.0) and 4 other tissues See more
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    Genomic context

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    See LINC02397 in Genome Data Viewer
    Location:
    12q22
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (92466679..92483947)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (92444153..92461422)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (92860455..92877723)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984467 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6732 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2880 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2881 Neighboring gene CLLU1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6734 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6735 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6736 Neighboring gene chronic lymphocytic leukemia up-regulated 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6737 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6738 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6739 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6740 Neighboring gene Sharpr-MPRA regulatory region 8533 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6742 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6743 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6744 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6745 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6747 Neighboring gene uncharacterized LOC105369904 Neighboring gene MPRA-validated peak1884 silencer Neighboring gene MTCH2 pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_144532.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC063949, AL713197, AW512352, BC036936

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      92466679..92483947
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      92444153..92461422
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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