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    Zfp9 zinc finger protein 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100158232, updated on 9-Dec-2024

    Summary

    Symbol
    Zfp9provided by RGD
    Full Name
    zinc finger protein 9provided by RGD
    Primary source
    RGD:2293498
    See related
    EnsemblRapid:ENSRNOG00000006726 AllianceGenome:RGD:2293498
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to several human genes including ZNF248 (zinc finger protein 248). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 30.8), Heart (RPKM 28.9) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Zfp9 in Genome Data Viewer
    Location:
    4q42
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (153311020..153329038, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (151638724..151656740, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (150482989..150533610, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene uncharacterized LOC134486626 Neighboring gene U4 spliceosomal RNA Neighboring gene BMS1 ribosome biogenesis factor Neighboring gene zinc finger protein 248 Neighboring gene ankyrin repeat domain containing 26 Neighboring gene uncharacterized LOC134486629 Neighboring gene calcium voltage-gated channel subunit alpha1 C

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC188133

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127635.2NP_001121107.1  zinc finger protein 25

      See identical proteins and their annotated locations for NP_001121107.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      B2GV60, F1LNE0
      Related
      ENSRNOP00000058904.4, ENSRNOT00000065579.6
      Conserved Domains (5) summary
      smart00349
      Location:867
      KRAB; krueppel associated box
      COG5048
      Location:170454
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:259279
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:847
      KRAB; KRAB box
      pfam13465
      Location:271296
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      153311020..153329038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)