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    Slx4ip SLX4 interacting protein [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499895, updated on 9-Dec-2024

    Summary

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    Symbol
    Slx4ipprovided by RGD
    Full Name
    SLX4 interacting proteinprovided by RGD
    Primary source
    RGD:1563120
    See related
    EnsemblRapid:ENSRNOG00000007430 AllianceGenome:RGD:1563120
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563120
    Summary
    Orthologous to human SLX4IP (SLX4 interacting protein). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 18.3), Adrenal (RPKM 17.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Slx4ip in Genome Data Viewer
    Location:
    3q36
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (144672898..144849468)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (124220215..124396797)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (129884871..130069371)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein lateral stalk subunit P1, pseudogene 2 Neighboring gene MKKS centrosomal shuttling protein Neighboring gene uncharacterized LOC120101686 Neighboring gene uncharacterized LOC108350474 Neighboring gene jagged canonical Notch ligand 1 Neighboring gene uncharacterized LOC102547655

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    protein SLX4IP

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271320.1 → NP_001258249.1  protein SLX4IP

      See identical proteins and their annotated locations for NP_001258249.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A0A8I6AGP4, M0R893
      Conserved Domains (1) summary
      pfam15744
      Location:10 → 363
      UPF0492; Uncharacterized protein family UPF0492

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      144672898..144849468
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063284382.1 → XP_063140452.1  protein SLX4IP isoform X5

      UniProtKB/TrEMBL
      A0A8I6A5H1

    2. XM_008762255.3 → XP_008760477.1  protein SLX4IP isoform X1

      See identical proteins and their annotated locations for XP_008760477.1

      UniProtKB/TrEMBL
      A0A8I6AGP4, M0R893
      Related
      ENSRNOP00000087503.2, ENSRNOT00000109869.2
      Conserved Domains (1) summary
      pfam15744
      Location:10 → 363
      UPF0492; Uncharacterized protein family UPF0492

    3. XM_017591988.3 → XP_017447477.1  protein SLX4IP isoform X1

      UniProtKB/TrEMBL
      A0A8I6AGP4, M0R893
      Related
      ENSRNOP00000065685.3, ENSRNOT00000070972.4
      Conserved Domains (1) summary
      pfam15744
      Location:10 → 363
      UPF0492; Uncharacterized protein family UPF0492

    4. XM_063284384.1 → XP_063140454.1  protein SLX4IP isoform X8

      UniProtKB/TrEMBL
      A6HQK6

    5. XM_008762257.4 → XP_008760479.1  protein SLX4IP isoform X1

      See identical proteins and their annotated locations for XP_008760479.1

      UniProtKB/TrEMBL
      A0A8I6AGP4, M0R893
      Conserved Domains (1) summary
      pfam15744
      Location:10 → 363
      UPF0492; Uncharacterized protein family UPF0492

    6. XM_008762256.4 → XP_008760478.1  protein SLX4IP isoform X1

      See identical proteins and their annotated locations for XP_008760478.1

      UniProtKB/TrEMBL
      A0A8I6AGP4, M0R893
      Conserved Domains (1) summary
      pfam15744
      Location:10 → 363
      UPF0492; Uncharacterized protein family UPF0492

    7. XM_008762261.4 → XP_008760483.1  protein SLX4IP isoform X5

      UniProtKB/TrEMBL
      A0A8I6A5H1
      Conserved Domains (1) summary
      pfam15744
      Location:10 → 289
      UPF0492; Uncharacterized protein family UPF0492

    8. XM_063284385.1 → XP_063140455.1  protein SLX4IP isoform X8

      UniProtKB/TrEMBL
      A6HQK6

    9. XM_039105701.2 → XP_038961629.1  protein SLX4IP isoform X8

      UniProtKB/TrEMBL
      A6HQK6
      Conserved Domains (1) summary
      pfam15744
      Location:10 → 139
      UPF0492; Uncharacterized protein family UPF0492

    10. XM_063284381.1 → XP_063140451.1  protein SLX4IP isoform X3

      UniProtKB/TrEMBL
      A0A0G2JVX1

    11. XM_063284383.1 → XP_063140453.1  protein SLX4IP isoform X6

      UniProtKB/TrEMBL
      A0A8I6A5H1

    12. XM_008762259.3 → XP_008760481.1  protein SLX4IP isoform X2

      UniProtKB/TrEMBL
      A0A8I6AGP4
      Conserved Domains (1) summary
      pfam15744
      Location:45 → 338
      UPF0492; Uncharacterized protein family UPF0492

    13. XM_008762260.4 → XP_008760482.1  protein SLX4IP isoform X4

      UniProtKB/TrEMBL
      A0A8I6AGP4
      Related
      ENSRNOP00000112579.1, ENSRNOT00000136744.1
      Conserved Domains (1) summary
      pfam15744
      Location:16 → 315
      UPF0492; Uncharacterized protein family UPF0492

    14. XM_039105700.2 → XP_038961628.1  protein SLX4IP isoform X7

      UniProtKB/TrEMBL
      A0A8I6A5H1
      Conserved Domains (1) summary
      pfam15744
      Location:47 → 249
      UPF0492; Uncharacterized protein family UPF0492
    Nucleotide Protein Strain
    Heading Accession and Version

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