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    Ctxnd1 cortexin domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102553298, updated on 17-Aug-2024

    Summary

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    Symbol
    Ctxnd1provided by RGD
    Full Name
    cortexin domain containing 1provided by RGD
    Primary source
    RGD:7557291
    See related
    EnsemblRapid:ENSRNOG00000084604 AllianceGenome:RGD:7557291
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Adrenal (RPKM 85.3) and Brain (RPKM 29.8) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ctxnd1 in Genome Data Viewer
    Location:
    1q31
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (147904760..147956206)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (138495689..138547105)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (146659395..146706084)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485143 Neighboring gene uncharacterized LOC134485142 Neighboring gene fumarylacetoacetate hydrolase Neighboring gene zinc finger AN1-type containing 6 Neighboring gene RNA, U6 small nuclear 891

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cortexin domain-containing 1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      147904760..147956206
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063280965.1 → XP_063137035.1  cortexin domain-containing 1 protein

      Related
      ENSRNOP00000111729.1, ENSRNOT00000164253.1

    RNA

    1. XR_010063087.1 RNA Sequence

    2. XR_010063089.1 RNA Sequence

    3. XR_010063092.1 RNA Sequence

    4. XR_010063090.1 RNA Sequence

    5. XR_010063088.1 RNA Sequence

    6. XR_010063091.1 RNA Sequence

    7. XR_010063093.1 RNA Sequence

    8. XR_010063086.1 RNA Sequence

    9. XR_010063085.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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