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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001177833.2 → NP_001171304.1 spermine oxidase isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) is the longest transcript and it encodes the longest protein (isoform a). This variant has also been called 'splice variant mu'.
- Source sequence(s)
-
AL831731, AL831781
- Consensus CDS
-
CCDS50719.1
- UniProtKB/Swiss-Prot
-
Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Related
- ENSMUSP00000105815.3, ENSMUST00000110186.9
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 578
- PLN02568; polyamine oxidase
-
NM_001177834.2 → NP_001171305.1 spermine oxidase isoform c
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses a different splice site and lacks an alternate exon, which shifts the reading frame, compared to variant 1. The resulting protein (isoform c) is shorter and has a distinct C-terminus when it is compared to isoform a. This variant has also been called 'splice variant beta'.
- Source sequence(s)
-
AL831731, AL831781
- Consensus CDS
-
CCDS50720.1
- UniProtKB/Swiss-Prot
-
Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Related
- ENSMUSP00000105817.2, ENSMUST00000110188.8
- Conserved Domains (2) summary
-
- PLN02568
Location:50 → 457
- PLN02568; polyamine oxidase
- pfam13450
Location:45 → 88
- NAD_binding_8; NAD(P)-binding Rossmann-like domain
-
NM_001177835.2 → NP_001171306.1 spermine oxidase isoform d
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks two alternate exons which shifts the reading frame, compared to variant 1. The resulting protein (isoform d) is shorter and has a distinct C-terminus when it is compared to isoform a. This transcript has also been called 'splice variant gamma'.
- Source sequence(s)
-
AL831731, AL831781
- Consensus CDS
-
CCDS50721.1
- UniProtKB/Swiss-Prot
-
Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Related
- ENSMUSP00000105818.3, ENSMUST00000110189.9
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 445
- PLN02568; polyamine oxidase
-
NM_001177836.2 → NP_001171307.1 spermine oxidase isoform e
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) uses a different splice site and lacks an alternate, in-frame exon, compared to variant 1. The resulting protein (isoform e) is shorter when it is compared to isoform a. This transcript and protein have also been called 'polyamine oxidase-m'.
- Source sequence(s)
-
AL831731, AL831781
- Consensus CDS
-
CCDS50718.1
- UniProtKB/Swiss-Prot
-
Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Related
- ENSMUSP00000105809.2, ENSMUST00000110180.2
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 412
- PLN02568; polyamine oxidase
-
NM_001177837.2 → NP_001171308.1 spermine oxidase isoform f
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) uses a different splice site and lacks an alternate, in-frame exon, compared to variant 1. The resulting protein (isoform f) is shorter when it is compared to isoform a.
- Source sequence(s)
-
AL831731, AL831781
- Consensus CDS
-
CCDS50722.1
- UniProtKB/TrEMBL
-
Q3TLR8
- Related
- ENSMUSP00000105810.2, ENSMUST00000110181.8
- Conserved Domains (2) summary
-
- pfam01593
Location:45 → 374
- Amino_oxidase; Flavin containing amine oxidoreductase
- pfam13450
Location:45 → 88
- NAD_binding_8; NAD(P)-binding Rossmann-like domain
-
NM_001177838.2 → NP_001171309.1 spermine oxidase isoform g
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) lacks three alternate exons but maintains the reading frame, compared to variant 1. The resulting protein (isoform g) is shorter when it is compared to isoform a. This transcript has also been called 'splice variant phi'.
- Source sequence(s)
-
AL831731, AL831781
- Consensus CDS
-
CCDS50724.1
- UniProtKB/Swiss-Prot
-
Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Related
- ENSMUSP00000105812.3, ENSMUST00000110183.9
- Conserved Domains (1) summary
-
- pfam13450
Location:45 → 88
- NAD_binding_8; NAD(P)-binding Rossmann-like domain
-
NM_001177839.2 → NP_001171310.1 spermine oxidase isoform h
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) lacks two alternate exons, which changes the reading frame and results in a premature stop codon, compared to variant 1. The resulting protein (isoform h) has a shorter and distinct C-terminus when it is compared to isoform a. This transcript has also been called 'splice variant epsilon' and 'polyamine oxidase-s'.
- Source sequence(s)
-
AL831731, AL831781
- Consensus CDS
-
CCDS50723.1
- UniProtKB/TrEMBL
-
A2ANQ4
- Related
- ENSMUSP00000105808.3, ENSMUST00000110179.9
- Conserved Domains (1) summary
-
- pfam01593
Location:45 → 193
- Amino_oxidase; Flavin containing amine oxidoreductase
-
NM_001177840.2 → NP_001171311.1 spermine oxidase isoform i
Status: VALIDATED
- Description
- Transcript Variant: This variant (9) lacks four alternate exons but maintains the reading frame, compared to variant 1. The resulting protein (isoform i) is shorter when it is compared to isoform a. This transcript has also been called 'splice variant delta'.
- Source sequence(s)
-
AL831731, AL831781
- Consensus CDS
-
CCDS50725.1
- UniProtKB/Swiss-Prot
-
Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Related
- ENSMUSP00000105811.3, ENSMUST00000110182.9
- Conserved Domains (1) summary
-
- pfam13450
Location:45 → 88
- NAD_binding_8; NAD(P)-binding Rossmann-like domain
-
NM_145533.3 → NP_663508.1 spermine oxidase isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate, in-frame, exon, compared to variant 1. The resulting protein (isoform b) is shorter when it is compared to isoform a. This transcript and protein have also been called 'polyamine oxidase-l'.
- Source sequence(s)
-
AL831731, AL831781
- Consensus CDS
-
CCDS16763.1
- UniProtKB/Swiss-Prot
- A2ANQ8, A2ANQ9, A2ANR0, A2ANR1, A2ANR2, Q70LA3, Q70LA4, Q70LA5, Q70LA7, Q70LA8, Q70LA9, Q70LB0, Q8CJ56, Q8CJ57, Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Related
- ENSMUSP00000028806.6, ENSMUST00000028806.12
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 548
- PLN02568; polyamine oxidase
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
131333624..131367103
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036161366.1 → XP_036017259.1 spermine oxidase isoform X2
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 577
- PLN02568; polyamine oxidase
-
XM_036161365.1 → XP_036017258.1 spermine oxidase isoform X1
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 578
- PLN02568; polyamine oxidase
-
XM_036161371.1 → XP_036017264.1 spermine oxidase isoform X3
- UniProtKB/Swiss-Prot
- A2ANQ8, A2ANQ9, A2ANR0, A2ANR1, A2ANR2, Q70LA3, Q70LA4, Q70LA5, Q70LA7, Q70LA8, Q70LA9, Q70LB0, Q8CJ56, Q8CJ57, Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 548
- PLN02568; polyamine oxidase
-
XM_006499290.3 → XP_006499353.1 spermine oxidase isoform X5
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 513
- PLN02568; polyamine oxidase
-
XM_006499293.4 → XP_006499356.1 spermine oxidase isoform X12
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 403
- PLN02568; polyamine oxidase
-
XM_017317769.2 → XP_017173258.1 spermine oxidase isoform X14
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 373
- PLN02568; polyamine oxidase
-
XM_030250476.2 → XP_030106336.1 spermine oxidase isoform X4
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 547
- PLN02568; polyamine oxidase
-
XM_006499291.2 → XP_006499354.1 spermine oxidase isoform X8
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 442
- PLN02568; polyamine oxidase
-
XM_036161395.1 → XP_036017288.1 spermine oxidase isoform X15
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 266
- PLN02568; polyamine oxidase
-
XM_006499289.5 → XP_006499352.1 spermine oxidase isoform X2
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 577
- PLN02568; polyamine oxidase
-
XM_006499287.4 → XP_006499350.1 spermine oxidase isoform X1
- UniProtKB/Swiss-Prot
-
Q99K82
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 578
- PLN02568; polyamine oxidase
-
XM_030250468.1 → XP_030106328.1 spermine oxidase isoform X3
- UniProtKB/Swiss-Prot
- A2ANQ8, A2ANQ9, A2ANR0, A2ANR1, A2ANR2, Q70LA3, Q70LA4, Q70LA5, Q70LA7, Q70LA8, Q70LA9, Q70LB0, Q8CJ56, Q8CJ57, Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 548
- PLN02568; polyamine oxidase
-
XM_030250500.1 → XP_030106360.1 spermine oxidase isoform X11
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 411
- PLN02568; polyamine oxidase
-
XM_011239475.3 → XP_011237777.1 spermine oxidase isoform X16
- Conserved Domains (2) summary
-
- PLN02568
Location:226 → 271
- PLN02568; polyamine oxidase
- pfam01593
Location:45 → 115
- Amino_oxidase; Flavin containing amine oxidoreductase
-
XM_030250509.1 → XP_030106369.1 spermine oxidase isoform X13
- Conserved Domains (1) summary
-
- PLN02568
Location:43 → 400
- PLN02568; polyamine oxidase
-
XM_030250487.2 → XP_030106347.1 spermine oxidase isoform X7
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 444
- PLN02568; polyamine oxidase
-
XM_006499292.4 → XP_006499355.1 spermine oxidase isoform X9
- Conserved Domains (1) summary
-
- PLN02568
Location:43 → 430
- PLN02568; polyamine oxidase
-
XM_036161370.1 → XP_036017263.1 spermine oxidase isoform X3
- UniProtKB/Swiss-Prot
- A2ANQ8, A2ANQ9, A2ANR0, A2ANR1, A2ANR2, Q70LA3, Q70LA4, Q70LA5, Q70LA7, Q70LA8, Q70LA9, Q70LB0, Q8CJ56, Q8CJ57, Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 548
- PLN02568; polyamine oxidase
-
XM_036161383.1 → XP_036017276.1 spermine oxidase isoform X10
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 412
- PLN02568; polyamine oxidase
-
XM_036161363.1 → XP_036017256.1 spermine oxidase isoform X1
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 578
- PLN02568; polyamine oxidase
-
XM_036161400.1 → XP_036017293.1 spermine oxidase isoform X17
- UniProtKB/TrEMBL
-
A2ANQ4
- Conserved Domains (1) summary
-
- pfam01593
Location:45 → 193
- Amino_oxidase; Flavin containing amine oxidoreductase
-
XM_036161361.1 → XP_036017254.1 spermine oxidase isoform X1
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 578
- PLN02568; polyamine oxidase
-
XM_030250513.2 → XP_030106373.1 spermine oxidase isoform X17
- UniProtKB/TrEMBL
-
A2ANQ4
- Conserved Domains (1) summary
-
- pfam01593
Location:45 → 193
- Amino_oxidase; Flavin containing amine oxidoreductase
-
XM_030250472.2 → XP_030106332.1 spermine oxidase isoform X3
- UniProtKB/Swiss-Prot
- A2ANQ8, A2ANQ9, A2ANR0, A2ANR1, A2ANR2, Q70LA3, Q70LA4, Q70LA5, Q70LA7, Q70LA8, Q70LA9, Q70LB0, Q8CJ56, Q8CJ57, Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 548
- PLN02568; polyamine oxidase
-
XM_036161368.1 → XP_036017261.1 spermine oxidase isoform X3
- UniProtKB/Swiss-Prot
- A2ANQ8, A2ANQ9, A2ANR0, A2ANR1, A2ANR2, Q70LA3, Q70LA4, Q70LA5, Q70LA7, Q70LA8, Q70LA9, Q70LB0, Q8CJ56, Q8CJ57, Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 548
- PLN02568; polyamine oxidase
-
XM_030250470.1 → XP_030106330.1 spermine oxidase isoform X3
- UniProtKB/Swiss-Prot
- A2ANQ8, A2ANQ9, A2ANR0, A2ANR1, A2ANR2, Q70LA3, Q70LA4, Q70LA5, Q70LA7, Q70LA8, Q70LA9, Q70LB0, Q8CJ56, Q8CJ57, Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 548
- PLN02568; polyamine oxidase
-
XM_006499288.3 → XP_006499351.1 spermine oxidase isoform X1
- UniProtKB/Swiss-Prot
-
Q99K82
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 578
- PLN02568; polyamine oxidase
-
XM_030250486.1 → XP_030106346.1 spermine oxidase isoform X6
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 445
- PLN02568; polyamine oxidase
-
XM_030250494.1 → XP_030106354.1 spermine oxidase isoform X8
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 442
- PLN02568; polyamine oxidase
-
XM_030250498.1 → XP_030106358.1 spermine oxidase isoform X10
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 412
- PLN02568; polyamine oxidase
-
XM_036161392.1 → XP_036017285.1 spermine oxidase isoform X12
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 403
- PLN02568; polyamine oxidase
-
XM_030250511.2 → XP_030106371.1 spermine oxidase isoform X17
- UniProtKB/TrEMBL
-
A2ANQ4
- Conserved Domains (1) summary
-
- pfam01593
Location:45 → 193
- Amino_oxidase; Flavin containing amine oxidoreductase
-
XM_030250481.1 → XP_030106341.1 spermine oxidase isoform X4
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 547
- PLN02568; polyamine oxidase
-
XM_036161362.1 → XP_036017255.1 spermine oxidase isoform X1
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 578
- PLN02568; polyamine oxidase
-
XM_036161369.1 → XP_036017262.1 spermine oxidase isoform X3
- UniProtKB/Swiss-Prot
- A2ANQ8, A2ANQ9, A2ANR0, A2ANR1, A2ANR2, Q70LA3, Q70LA4, Q70LA5, Q70LA7, Q70LA8, Q70LA9, Q70LB0, Q8CJ56, Q8CJ57, Q99K82
- UniProtKB/TrEMBL
-
Q3UPW5
- Conserved Domains (1) summary
-
- PLN02568
Location:50 → 548
- PLN02568; polyamine oxidase
RNA
-
XR_374452.3 RNA Sequence