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    AA536875 expressed sequence AA536875 [ Mus musculus (house mouse) ]

    Gene ID: 380934, updated on 4-Jan-2025

    Summary

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    Official Symbol
    AA536875provided by MGI
    Official Full Name
    expressed sequence AA536875provided by MGI
    Primary source
    MGI:MGI:2145569
    See related
    Ensembl:ENSMUSG00000115016 AllianceGenome:MGI:2145569
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1591
    Summary
    Is expressed in 1-cell stage embryo; 2-cell stage embryo; primary oocyte; and secondary oocyte. [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See AA536875 in Genome Data Viewer
    Location:
    14 E5; 14 66.04 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (123405915..123413588)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (123168503..123176176)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930594M22 gene Neighboring gene STARR-seq mESC enhancer starr_37784 Neighboring gene STARR-positive B cell enhancer ABC_E8582 Neighboring gene transmembrane and tetratricopeptide repeat containing 4 Neighboring gene STARR-seq mESC enhancer starr_37785 Neighboring gene predicted gene, 57613 Neighboring gene STARR-seq mESC enhancer starr_37786 Neighboring gene STARR-seq mESC enhancer starr_37787 Neighboring gene sodium leak channel, non-selective Neighboring gene pericentriolar material 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_37789 Neighboring gene STARR-seq mESC enhancer starr_37790 Neighboring gene STARR-seq mESC enhancer starr_37793 Neighboring gene predicted gene, 46490

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Characterization of zygotic genome activation-dependent maternal mRNA clearance in mouse. Sha QQ, et al. Nucleic Acids Res, 2020 Jan 24. PMID 31777931, Free PMC Article
    2. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045143.1 RNA Sequence

      Status: PREDICTED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC158982, AK136126, AK166554
      Related
      ENSMUST00000227339.2

    2. NR_045144.1 RNA Sequence

      Status: PREDICTED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon compared to variant 1.
      Source sequence(s)
      AC158982, AK166554
      Related
      ENSMUST00000227709.2

    3. NR_045145.1 RNA Sequence

      Status: PREDICTED

      Description
      Transcript Variant: This variant (3) differs in the 5' end and lacks an alternate exon compared to variant 1.
      Source sequence(s)
      AC158982, CF172390

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      123405915..123413588
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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