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    B3GAT1-DT B3GAT1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 283177, updated on 10-Dec-2024

    Summary

    Official Symbol
    B3GAT1-DTprovided by HGNC
    Official Full Name
    B3GAT1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:27449
    See related
    Ensembl:ENSG00000255545 AllianceGenome:HGNC:27449
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in kidney (RPKM 1.1), small intestine (RPKM 1.1) and 13 other tissues See more
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    Genomic context

    See B3GAT1-DT in Genome Data Viewer
    Location:
    11q25
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (134436482..134505661)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (134478514..134548064)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (134306376..134375555)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134246355-134247254 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134263326-134264156 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:134267481-134268340 Neighboring gene beta-1,3-glucuronyltransferase 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134274303-134274804 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134280725-134281284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134295447-134295948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134295949-134296448 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134308936-134309436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134335892-134336457 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134336458-134337022 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134343630-134344329 Neighboring gene MPRA-validated peak1527 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134378035-134378536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134379792-134380320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134379262-134379791 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134386567-134387092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134397395-134397896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134406331-134406830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134410956-134411456 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134411457-134411957 Neighboring gene uncharacterized LOC124902799 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134442592-134443202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134445354-134445854 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134445855-134446355 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134453879-134454524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134454525-134455169 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:134455170-134455814 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_19765 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134484673-134485174 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:134507261-134507391 Neighboring gene uncharacterized LOC105369583

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033852.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AP003971, AP004608
      Related
      ENST00000533390.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      134436482..134505661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      134478514..134548064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)