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    SVIL2P supervillin family member 2, pseudogene [ Homo sapiens (human) ]

    Gene ID: 645954, updated on 10-Dec-2024

    Summary

    Official Symbol
    SVIL2Pprovided by HGNC
    Official Full Name
    supervillin family member 2, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:44959
    See related
    AllianceGenome:HGNC:44959
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SVILP1
    Expression
    Broad expression in endometrium (RPKM 1.2), gall bladder (RPKM 0.9) and 22 other tissues See more
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    Genomic context

    See SVIL2P in Genome Data Viewer
    Location:
    10p11.23
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (30692274..30717013)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (30723242..30748280)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (30981203..31005942)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376479 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:30885919-30886534 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:30886535-30887149 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:30894172-30894987 Neighboring gene uncharacterized LOC124902404 Neighboring gene lysozyme like 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:30932862-30933433 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:30950154-30951353 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:30970851-30972050 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:30972911-30973410 Neighboring gene NANOG hESC enhancer GRCh37_chr10:30976431-30976969 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:30984558-30985757 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3222 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3221 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3223 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:30994171-30994694 Neighboring gene long intergenic non-protein coding RNA 2644 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3225 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3226 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3227 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3228 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2268 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2269 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:31072075-31072575 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:31106665-31107586 Neighboring gene uncharacterized LOC124902405

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    General gene information

    Markers

    Other Names

    • supervillin pseudogene 1

    Clone Names

    • FLJ59067, FLJ59642

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_036438.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK302694, AL451107

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      30692274..30717013
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      30723242..30748280
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)