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    LOC105373100 uncharacterized LOC105373100 [ Homo sapiens (human) ]

    Gene ID: 105373100, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC105373100
    Gene description
    uncharacterized LOC105373100
    See related
    Ensembl:ENSG00000225929
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 5.7) See more
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    Genomic context

    See LOC105373100 in Genome Data Viewer
    Location:
    22q13.33
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (50735829..50738169, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (51249409..51251748, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (51174257..51176597, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905149 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:51073690-51074206 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:51074207-51074721 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:51079931-51080494 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:51080495-51081059 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr22:51081781-51082282 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr22:51082283-51082782 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr22:51094338-51095537 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:51113751-51114554 Neighboring gene SH3 and multiple ankyrin repeat domains 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:51133481-51133981 Neighboring gene RNA, U6 small nuclear 409, pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr22:51142004-51143203 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:51143385-51144035 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19333 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:51178129-51178925 Neighboring gene acrosin Neighboring gene SNRPA1 pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134637.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC000036, BC050343, DB031055, HY197458
      Related
      ENST00000449652.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      50735829..50738169 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_015148969.2 Reference GRCh38.p14 PATCHES

      Range
      71948..74289 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      51249409..51251748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)