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    TSTD3 thiosulfate sulfurtransferase like domain containing 3 [ Homo sapiens (human) ]

    Gene ID: 100130890, updated on 10-Dec-2024

    Summary

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    Official Symbol
    TSTD3provided by HGNC
    Official Full Name
    thiosulfate sulfurtransferase like domain containing 3provided by HGNC
    Primary source
    HGNC:HGNC:40910
    See related
    Ensembl:ENSG00000279170 AllianceGenome:HGNC:40910
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in testis (RPKM 1.4), prostate (RPKM 1.1) and 25 other tissues See more
    Orthologs
    all
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    Genomic context

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    See TSTD3 in Genome Data Viewer
    Location:
    6q16.2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (99521049..99587775)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (100695384..100761219)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (99968925..100035651)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:99872987-99874186 Neighboring gene PNISR antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr6:99904596-99905315 Neighboring gene PNN interacting serine and arginine rich protein Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17417 Neighboring gene ubiquitin specific peptidase 45 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:99962307-99963214 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:99963215-99964120 Neighboring gene uncharacterized LOC124901365 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24857 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24858 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24859 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24862 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24860 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:100023517-100023714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24863 Neighboring gene CCNC and PRDM13 intergenic region DNase I hypersensitve site DHS6S1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17421 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:100051429-100052268 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17422 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:100061850-100062398 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17423 Neighboring gene cyclin C Neighboring gene ribosomal protein S3 pseudogene 5 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:100097329-100097949 Neighboring gene PR/SET domain 13 Neighboring gene Sharpr-MPRA regulatory region 7231 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:100271711-100272281 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:100379521-100380020 Neighboring gene melanin concentrating hormone receptor 2 Neighboring gene MCHR2 antisense RNA 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Homology

    Other Names

    • rhodanese domain-containing protein 3
    • thiosulfate sulfurtransferase (rhodanese)-like domain containing 3
    • thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3

    Clone Names

    • DKFZp781B0241

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_197367.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784
      Related
      ENST00000607332.2

    2. NR_197368.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    3. NR_197369.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    4. NR_197370.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    5. NR_197371.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    6. NR_197372.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    7. NR_197373.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    8. NR_197374.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784
      Related
      ENST00000651400.1

    9. NR_197375.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    10. NR_197376.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    11. NR_197377.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784
      Related
      ENST00000652704.1

    12. NR_197378.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    13. NR_197379.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    14. NR_197380.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    15. NR_197381.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    16. NR_197382.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    17. NR_197383.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    18. NR_197384.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    19. NR_197385.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    20. NR_197386.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    21. NR_197387.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137784

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      99521049..99587775
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      100695384..100761219
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001195131.2: Suppressed sequence

      Description
      NM_001195131.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    H0UI37.1 GenPept UniProtKB/Swiss-Prot:H0UI37

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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    Research Materials