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    C10h17orf58 similar to human chromosome 17 open reading frame 58 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498014, updated on 27-Nov-2024

    Summary

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    Official Symbol
    C10h17orf58provided by RGD
    Official Full Name
    similar to human chromosome 17 open reading frame 58provided by RGD
    Primary source
    RGD:1565033
    See related
    EnsemblRapid:ENSRNOG00000043295 AllianceGenome:RGD:1565033
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565033
    Summary
    Orthologous to human C17orf58 (chromosome 17 open reading frame 58). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Lung (RPKM 106.3), Heart (RPKM 75.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C10h17orf58 in Genome Data Viewer
    Location:
    10q32.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (92472779..92477330)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (91972938..91977606)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (95240314..95245146)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene karyopherin subunit alpha 2 Neighboring gene transfer RNA arginine (anticodon CCG) 2 Neighboring gene bromodomain PHD finger transcription factor Neighboring gene uncharacterized LOC120095194 Neighboring gene U11 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    UPF0450 protein C17orf58 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109050.2 → NP_001102520.2  UPF0450 protein C17orf58 homolog isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010

    2. NM_001402041.1 → NP_001388970.1  UPF0450 protein C17orf58 homolog isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      D3ZWY4
      Related
      ENSRNOP00000063842.3, ENSRNOT00000065589.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      92472779..92477330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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