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    Gin1 gypsy retrotransposon integrase 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 316687, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gin1provided by RGD
    Official Full Name
    gypsy retrotransposon integrase 1provided by RGD
    Primary source
    RGD:1307449
    See related
    EnsemblRapid:ENSRNOG00000011962 AllianceGenome:RGD:1307449
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307449
    Summary
    Predicted to enable nucleic acid binding activity. Predicted to be involved in DNA integration. Orthologous to human GIN1 (gypsy retrotransposon integrase 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 40.0), Adrenal (RPKM 36.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Gin1 in Genome Data Viewer
    Location:
    9q36
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (105740914..105762357, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (98293596..98315155, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (111200285..111220738, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene tumor protein, translationally-controlled 1 pseudogene 6 Neighboring gene potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like Neighboring gene peptidylglycine alpha-amidating monooxygenase Neighboring gene diphosphoinositol pentakisphosphate kinase 2 Neighboring gene transfer RNA proline (anticodon AGG) 31 Neighboring gene macrophage immunometabolism regulator

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    gypsy retrotransposon integrase-like protein 1
    Names
    GIN-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025012.1 → NP_001020183.1  gypsy retrotransposon integrase-like protein 1

      Status: PROVISIONAL

      Source sequence(s)
      BC082058
      UniProtKB/Swiss-Prot
      Q66H30
      UniProtKB/TrEMBL
      A6JR80
      Related
      ENSRNOP00000016028.6, ENSRNOT00000016028.9
      Conserved Domains (1) summary
      pfam17921
      Location:65 → 124
      Integrase_H2C2; Integrase zinc binding domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      105740914..105762357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039083782.2 → XP_038939710.1  gypsy retrotransposon integrase-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2R6L5, A6JR80
      Related
      ENSRNOP00000073007.2, ENSRNOT00000087355.3
      Conserved Domains (1) summary
      pfam17921
      Location:78 → 137
      Integrase_H2C2; Integrase zinc binding domain

    2. XM_063267333.1 → XP_063123403.1  gypsy retrotransposon integrase-like protein 1 isoform X2

    3. XM_039083785.1 → XP_038939713.1  gypsy retrotransposon integrase-like protein 1 isoform X2

      Conserved Domains (1) summary
      cl21549
      Location:9 → 66
      rve; Integrase core domain

    4. XM_039083784.2 → XP_038939712.1  gypsy retrotransposon integrase-like protein 1 isoform X2

      Conserved Domains (1) summary
      cl21549
      Location:9 → 66
      rve; Integrase core domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q66H30.1 GenPept UniProtKB/Swiss-Prot:Q66H30

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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