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    xynR DNA-binding transcriptional repressor XynR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945016, updated on 3-Dec-2024

    Summary

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    Official Symbol
    xynR
    Official Full Name
    DNA-binding transcriptional repressor XynR
    Primary source
    ECOCYC:G6144
    Locus tag
    b0272
    See related
    ASAP:ABE-0000933
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0273; yagI
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    Genomic context

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    Sequence:
    NC_000913.3 (288404..289162, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative D-xylonate transporter YagG Neighboring gene putative xylosidase/arabinosidase Neighboring gene ornithine carbamoyltransferase ArgF Neighboring gene putative translational regulatory protein ArgL Neighboring gene protein YkgS

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The R1 conjugative plasmid increases Escherichia coli biofilm formation through an envelope stress response. Yang X, et al. Appl Environ Microbiol, 2008 May. PMID 18344336, Free PMC Article
    2. Regulatory role of XynR (YagI) in catabolism of xylonate in Escherichia coli K-12. Shimada T, et al. FEMS Microbiol Lett, 2017 Dec 1. PMID 29087459
    3. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    4. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    5. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transcription cis-regulatory region binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-binding transcriptional repressor XynR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      288404..289162 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414806.1 DNA-binding transcriptional repressor XynR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414806.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P77300
      Conserved Domains (1) summary
      COG1414
      Location:5 → 250
      IclR; DNA-binding transcriptional regulator, IclR family [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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