U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    fumE fumarase E [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946861, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    fumE
    Official Full Name
    fumarase E
    Primary source
    ECOCYC:EG11162
    Locus tag
    b2929
    See related
    ASAP:ABE-0009612
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2925; yggD
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (3074686..3075195, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene phosphoglycerate kinase Neighboring gene D-erythrose-4-phosphate dehydrogenase Neighboring gene P-loop NTPase domain-containing protein YggC Neighboring gene fructose 1,6-bisphosphatase YggF Neighboring gene putative zinc-binding dehydrogenase YggP Neighboring gene mannitol-specific PTS enzyme IICB component CmtA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification, molecular cloning and sequence analysis of a gene cluster encoding the class II fructose 1,6-bisphosphate aldolase, 3-phosphoglycerate kinase and a putative second glyceraldehyde 3-phosphate dehydrogenase of Escherichia coli. Alefounder PR, et al. Mol Microbiol, 1989 Jun. PMID 2546007
    2. The mannitol operon repressor MtlR belongs to a new class of transcription regulators in bacteria. Tan K, et al. J Biol Chem, 2009 Dec 25. PMID 19840941, Free PMC Article
    3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    4. Nontargeted in vitro metabolomics for high-throughput identification of novel enzymes in Escherichia coli. Sévin DC, et al. Nat Methods, 2017 Feb. PMID 27941785
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables fumarate hydratase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables fumarate hydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    fumarase E
    NP_417404.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3074686..3075195 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417404.1 fumarase E [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417404.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5ZF15
      Conserved Domains (1) summary
      PRK10022
      Location:3 → 169
      PRK10022; putative DNA-binding transcriptional regulator; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.