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    yjiR fused putative DNA-binding transcriptional regulator/putative aminotransferase YjiR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 949089, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yjiR
    Official Full Name
    fused putative DNA-binding transcriptional regulator/putative aminotransferase YjiR
    Primary source
    ECOCYC:G7936
    Locus tag
    b4340
    See related
    ASAP:ABE-0014232
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4331
    Summary
    AFMB Structural Genomics target Number 74 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG12579].
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    Genomic context

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    Sequence:
    NC_000913.3 (4570162..4571574, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YtiE Neighboring gene pseudo Neighboring gene DUF1127 domain-containing protein YjiS Neighboring gene putative uncharacterized protein YjiT

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    2. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    3. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
    4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    5. Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies. Rigali S, et al. J Biol Chem, 2002 Apr 12. PMID 11756427

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transaminase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in alpha-amino acid metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    fused putative DNA-binding transcriptional regulator/putative aminotransferase YjiR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4570162..4571574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418760.1 fused putative DNA-binding transcriptional regulator/putative aminotransferase YjiR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418760.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T6BEX4
      Conserved Domains (1) summary
      COG1167
      Location:1 → 470
      ARO8; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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