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    yfeN putative outer membrane porin YfeN [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946872, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yfeN
    Official Full Name
    putative outer membrane porin YfeN
    Primary source
    ECOCYC:G7256
    Locus tag
    b2408
    See related
    ASAP:ABE-0007930
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2402
    Summary
    The first 22 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG13160]. YfeN is a hypothetical protein. [More information is available at EcoCyc: G7256].
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    Genomic context

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    Sequence:
    NC_000913.3 (2525127..2525891)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene xanthosine:H(+) symporter XapB Neighboring gene xanthosine phosphorylase Neighboring gene putative DNA-binding transcriptional regulator YfeR Neighboring gene putative solute:Na(+) symporter Neighboring gene PF12843 family protein YpeB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Casadio R, et al. Protein Sci, 2003 Jun. PMID 12761386, Free PMC Article
    2. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    3. Identification and characterization of genes (xapA, xapB, and xapR) involved in xanthosine catabolism in Escherichia coli. Seeger C, et al. J Bacteriol, 1995 Oct. PMID 7559336, Free PMC Article
    4. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in cell outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative outer membrane porin YfeN

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2525127..2525891
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416903.1 putative outer membrane porin YfeN [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416903.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376M6A7
      Conserved Domains (1) summary
      PRK11528
      Location:1 → 254
      PRK11528; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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