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    rspR DNA-binding transcriptional repressor RspR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946087, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rspR
    Official Full Name
    DNA-binding transcriptional repressor RspR
    Primary source
    ECOCYC:G6814
    Locus tag
    b1540
    See related
    ASAP:ABE-0005144
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1533; ydfH
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    Genomic context

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    Sequence:
    NC_000913.3 (1628352..1629038)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene peptidyl-dipeptidase Dcp Neighboring gene 3-hydroxy acid dehydrogenase YdfG Neighboring gene putative selenoprotein YdfZ Neighboring gene putative oxidoreductase YdfI

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. YdfH identified as a repressor of rspA by the use of reduced genome Escherichia coli MGF-01. Sakihama Y, et al. Biosci Biotechnol Biochem, 2012. PMID 22972332
    2. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    3. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475
    4. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    5. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Lu P, et al. Nat Biotechnol, 2007 Jan. PMID 17187058

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding transcriptional repressor RspR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1628352..1629038
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416058.1 DNA-binding transcriptional repressor RspR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416058.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A418GRE3, A0A7D7KG19, A0A8S7B6C9
      Conserved Domains (1) summary
      COG1802
      Location:1 → 226
      GntR; DNA-binding transcriptional regulator, GntR family [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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