U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yebF secreted protein YebF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946363, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yebF
    Official Full Name
    secreted protein YebF
    Primary source
    ECOCYC:EG11807
    Locus tag
    b1847
    See related
    ASAP:ABE-0006141
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1848
    Summary
    YebF is secreted into the periplasm normally, then exported into the medium by an unknown mechanism. [More information is available at EcoGene: EG11807]. YebF is a secreted protein of unknown function. [More information is available at EcoCyc: EG11807].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1930034..1930390, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene exonuclease X Neighboring gene oligopeptidase B Neighboring gene DUF533 domain-containing inner membrane protein YebE Neighboring gene DNA damage-inducible protein YebG Neighboring gene phosphoribosylglycinamide formyltransferase 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The disulphide isomerase DsbC cooperates with the oxidase DsbA in a DsbD-independent manner. Vertommen D, et al. Mol Microbiol, 2008 Jan. PMID 18036138, Free PMC Article
    2. Quantifying changes in the thiol redox proteome upon oxidative stress in vivo. Leichert LI, et al. Proc Natl Acad Sci U S A, 2008 Jun 17. PMID 18287020, Free PMC Article
    3. Extracellular accumulation of recombinant proteins fused to the carrier protein YebF in Escherichia coli. Zhang G, et al. Nat Biotechnol, 2006 Jan. PMID 16369539
    4. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    5. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on mature peptide
      Title: Extracellular accumulation of recombinant proteins fused to the carrier protein YebF in Escherichia coli.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    secreted protein YebF

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1930034..1930390 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416361.2 secreted protein YebF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416361.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A6YRS4
      Conserved Domains (1) summary
      PRK13680
      Location:2 → 118
      PRK13680; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.