U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yfbU PF03887 family protein YfbU [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946767, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yfbU
    Official Full Name
    PF03887 family protein YfbU
    Primary source
    ECOCYC:G7188
    Locus tag
    b2294
    See related
    ASAP:ABE-0007571
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2288
    Summary
    YfbU is required for MazF-mediated cell death after DNA damage (Amitai, 2009). yfbU is likely to be in an operon with sugar phosphatase gene ybfT. yfbU belongs to pfam PF03887, UPF0304 and COG3013. [More information is available at EcoGene: EG14105].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (2412100..2412594, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative transporter YfbS Neighboring gene hexitol phosphatase A Neighboring gene PF04217 family membrane protein YfbV Neighboring gene acetate kinase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Diamonds in the rough: a strong case for the inclusion of weak-intensity X-ray diffraction data. Wang J, et al. Acta Crystallogr D Biol Crystallogr, 2014 May. PMID 24816117, Free PMC Article
    2. Life, death, differentiation, and the multicellularity of bacteria. Rosenberg SM. PLoS Genet, 2009 Mar. PMID 19282973, Free PMC Article
    3. Escherichia coli MazF leads to the simultaneous selective synthesis of both "death proteins" and "survival proteins". Amitai S, et al. PLoS Genet, 2009 Mar. PMID 19282968, Free PMC Article
    4. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
    5. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within DNA damage response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    PF03887 family protein YfbU

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2412100..2412594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416797.2 PF03887 family protein YfbU [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416797.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AGZ4, A0A8S0FPT7, A0A8S7EDH2
      Conserved Domains (1) summary
      PRK05445
      Location:1 → 164
      PRK05445; YfbU family protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.