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    rpnA recombination-promoting nuclease RpnA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947917, updated on 17-Dec-2024

    Summary

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    Official Symbol
    rpnA
    Official Full Name
    recombination-promoting nuclease RpnA
    Primary source
    ECOCYC:EG11750
    Locus tag
    b3411
    See related
    ASAP:ABE-0011134
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3398; yhgA
    Summary
    YhgA has similarity to Escherichia coli YadD, which is encoded within the panBCD gene cluster . [More information is available at EcoCyc: EG11750].
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    Genomic context

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    Sequence:
    NC_000913.3 (3543167..3544045)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ferrous iron transport protein A Neighboring gene Fe(2(+)) transporter FeoB Neighboring gene ferrous iron transport protein FeoC Neighboring gene pimeloyl-acyl carrier protein methyl ester esterase Neighboring gene DNA utilization protein YhgH

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Re-examination of the role of the periplasmic domain of EnvZ in sensing of osmolarity signals in Escherichia coli. Leonardo MR, et al. Mol Microbiol, 1996 Nov. PMID 8939425
    2. Nucleotide sequence of the bioH gene of Escherichia coli. O'Regan M, et al. Nucleic Acids Res, 1989 Oct 11. PMID 2678009, Free PMC Article
    3. Characterization and sequence of the Escherichia coli panBCD gene cluster. Merkel WK, et al. FEMS Microbiol Lett, 1996 Oct 1. PMID 8837478
    4. Rpn (YhgA-Like) Proteins of Escherichia coli K-12 and Their Contribution to RecA-Independent Horizontal Transfer. Kingston AW, et al. J Bacteriol, 2017 Apr 1. PMID 28096446, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables double-stranded DNA endonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables double-stranded DNA endonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables endodeoxyribonuclease activity, producing 5'-phosphomonoesters IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in DNA recombination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within DNA recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    recombination-promoting nuclease RpnA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3543167..3544045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417870.1 recombination-promoting nuclease RpnA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417870.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FX64
      Conserved Domains (1) summary
      PRK09857
      Location:1 → 292
      PRK09857; recombination-promoting nuclease RpnA
    Nucleotide Protein
    Heading Accession and Version

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