U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Zswim9 zinc finger SWIM-type containing 9 [ Mus musculus (house mouse) ]

    Gene ID: 321008, updated on 27-Nov-2024

    Summary

    Official Symbol
    Zswim9provided by MGI
    Official Full Name
    zinc finger SWIM-type containing 9provided by MGI
    Primary source
    MGI:MGI:2447816
    See related
    Ensembl:ENSMUSG00000070814 AllianceGenome:MGI:2447816
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    6330408A02Rik
    Summary
    Acts upstream of or within hematopoietic progenitor cell differentiation. Is expressed in central nervous system. Orthologous to human ZSWIM9 (zinc finger SWIM-type containing 9). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 3.7), CNS E14 (RPKM 2.8) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Zswim9 in Genome Data Viewer
    Location:
    7 A1; 7 7.82 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (12992894..13012647, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (13258967..13278721, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 89 Neighboring gene STARR-seq mESC enhancer starr_18077 Neighboring gene vomeronasal 1 receptor, pseudogene 69 Neighboring gene STARR-positive B cell enhancer ABC_E4896 Neighboring gene ligase I, DNA, ATP-dependent Neighboring gene STARR-seq mESC enhancer starr_18078 Neighboring gene phospholipase A2, group IVC (cytosolic, calcium-independent) Neighboring gene ribosomal protein S8, pseudogene 4 Neighboring gene phospholipase A2, group IVC (cytosolic, calcium-independent), pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    uncharacterized protein ZSWIM9
    Names
    uncharacterized protein C19orf68 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177312.4NP_796286.2  uncharacterized protein ZSWIM9

      See identical proteins and their annotated locations for NP_796286.2

      Status: VALIDATED

      Source sequence(s)
      BC075681, CV783961
      UniProtKB/TrEMBL
      A0A0R4J1C4
      Related
      ENSMUSP00000104172.5, ENSMUST00000108532.11

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      12992894..13012647 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)