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    si:ch1073-416j23.1 si:ch1073-416j23.1 [ Danio rerio (zebrafish) ]

    Gene ID: 553480, updated on 4-Jan-2025

    Summary

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    Official Symbol
    si:ch1073-416j23.1provided by ZNC
    Official Full Name
    si:ch1073-416j23.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-100922-35
    See related
    Ensembl:ENSDARG00000055934 AllianceGenome:ZFIN:ZDB-GENE-100922-35
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable metal ion binding activity. Predicted to act upstream of or within signal transduction. [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See si:ch1073-416j23.1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (10782293..10804797, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (10810976..10833587, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene protein lifeguard 3 Neighboring gene GDP-mannose pyrophosphorylase Aa Neighboring gene si:dkey-22p6.2 Neighboring gene uncharacterized LOC137496452 Neighboring gene acid-sensing (proton-gated) ion channel family member 4a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization. Cheung CT, et al. BMC Genomics, 2019 Jul 15. PMID 31307377, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    rac GTPase-activating protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      10782293..10804797 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_690285.9 → XP_695377.8  rac GTPase-activating protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8N7TF76, F1R738
      Related
      ENSDARP00000072810.5, ENSDART00000078348.5

    2. XM_068223555.1 → XP_068079656.1  rac GTPase-activating protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8N7TF76
      Related
      ENSDARP00000114966.1, ENSDART00000134911.2
    Nucleotide Protein Strain
    Heading Accession and Version

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