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    cimip2b ciliary microtubule inner protein 2B [ Danio rerio (zebrafish) ]

    Gene ID: 100009651, updated on 4-Jan-2025

    Summary

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    Official Symbol
    cimip2bprovided by ZNC
    Official Full Name
    ciliary microtubule inner protein 2Bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070209-41
    See related
    Ensembl:ENSDARG00000100292 AllianceGenome:ZFIN:ZDB-GENE-070209-41
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fam166b; zgc:158652
    Summary
    Predicted to be located in axonemal microtubule. Orthologous to human CIMIP2B (ciliary microtubule inner protein 2B). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See cimip2b in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (17077435..17083180, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (17119471..17125216, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene ATPase phospholipid transporting 8B5b Neighboring gene AP-4 complex accessory subunit RUSC2 Neighboring gene si:dkey-106l3.7 Neighboring gene si:dkey-106l3.6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of vascular and hematopoietic genes downstream of etsrp by deep sequencing in zebrafish. Gomez G, et al. PLoS One, 2012. PMID 22438865, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in axonemal microtubule ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in microtubule cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ciliary microtubule inner protein 2B
    Names
    UPF0605 protein B
    family with sequence similarity 166 member B
    protein FAM166B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083020.3 → NP_001076489.2  ciliary microtubule inner protein 2B

      Status: VALIDATED

      Source sequence(s)
      CR855996, EB970214, EH460160
      UniProtKB/Swiss-Prot
      A2RRW4, Q0P4C8
      UniProtKB/TrEMBL
      A0A0R4I9Q0, A0A8M1NCC2
      Related
      ENSDARP00000130067.1, ENSDART00000170083.2
      Conserved Domains (1) summary
      pfam10629
      Location:16 → 63
      DUF2475; Protein of unknown function (DUF2475)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      17077435..17083180 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2RRW4.1 GenPept UniProtKB/Swiss-Prot:A2RRW4

    Gene LinkOut

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