U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    fsip1 fibrous sheath interacting protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 550574, updated on 4-Jan-2025

    Summary

    Official Symbol
    fsip1provided by ZNC
    Official Full Name
    fibrous sheath interacting protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-428
    See related
    AllianceGenome:ZFIN:ZDB-GENE-050417-428
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:113106
    Summary
    Orthologous to human FSIP1 (fibrous sheath interacting protein 1). [provided by Alliance of Genome Resources, Jan 2025]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See fsip1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_003335567.1 (24746..51248, complement)
    RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_003336698.1 (36..695)
    RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_008805424.1 (1..296, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003335567.1 (24746..51248, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003336698.1 (36..695)
    105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_008805424.1 (1..296, complement)

    NW_003336698.1Genomic Context describing neighboring genes

    NW_003335567.1Genomic Context describing neighboring genes Neighboring gene thrombospondin 1a

    NW_008805424.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    fibrous sheath-interacting protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017876.1NP_001017876.1  fibrous sheath-interacting protein 1

      See identical proteins and their annotated locations for NP_001017876.1

      Status: PROVISIONAL

      Source sequence(s)
      BC093429
      UniProtKB/Swiss-Prot
      Q566N9
      Conserved Domains (1) summary
      pfam15554
      Location:45328
      FSIP1; FSIP1 family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NW_003335567.1 Reference GRCz11 Primary Assembly

      Range
      24746..51248 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 Primary Assembly

    Genomic

    1. NW_003336698.1 Reference GRCz11 Primary Assembly

      Range
      36..695
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 Primary Assembly

    Genomic

    1. NW_008805424.1 Reference GRCz11 Primary Assembly

      Range
      1..296 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)