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    btbd9 BTB (POZ) domain containing 9 [ Danio rerio (zebrafish) ]

    Gene ID: 557659, updated on 4-Jan-2025

    Summary

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    Official Symbol
    btbd9provided by ZNC
    Official Full Name
    BTB (POZ) domain containing 9provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040704-39
    See related
    Ensembl:ENSDARG00000068983 AllianceGenome:ZFIN:ZDB-GENE-040704-39
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:91846; wu:fd16d11
    Summary
    Acts upstream of or within brain development. Predicted to be active in cytoplasm. Orthologous to human BTBD9 (BTB domain containing 9). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See btbd9 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (44763414..44782442, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (44626931..44645511, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene zinc finger, AN1-type domain 3 Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene glyoxalase 1 Neighboring gene oocyte zinc finger protein XlCOF19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of miRNAs involved in cold acclimation of zebrafish ZF4 cells. Ji X, et al. PLoS One, 2020. PMID 31923196, Free PMC Article
    2. Large-scale discovery of novel genetic causes of developmental disorders. Deciphering Developmental Disorders Study. Nature, 2015 Mar 12. PMID 25533962, Free PMC Article
    3. Anti-apoptotic effects of IGF-I on mortality and dysmorphogenesis in tbx5-deficient zebrafish embryos. Tsai TC, et al. BMC Dev Biol, 2018 Mar 5. PMID 29506474, Free PMC Article
    4. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC91846

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in adult locomotory behavior IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within brain development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in circadian behavior IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in modulation of chemical synaptic transmission IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002198.1 → NP_001002198.1  BTB/POZ domain-containing protein 9

      See identical proteins and their annotated locations for NP_001002198.1

      Status: PROVISIONAL

      Source sequence(s)
      BC074031
      UniProtKB/TrEMBL
      Q6GML3
      Related
      ENSDARP00000090762.4, ENSDART00000099990.5
      Conserved Domains (4) summary
      smart00225
      Location:37 → 137
      BTB; Broad-Complex, Tramtrack and Bric a brac
      cd14822
      Location:137 → 195
      BACK_BTBD9_like; BACK-like Domain C-terminal to BTB in BTB/POZ domain-containing protein 9 and similar proteins
      pfam00651
      Location:33 → 133
      BTB; BTB/POZ domain
      pfam00754
      Location:324 → 406
      F5_F8_type_C; F5/8 type C domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      44763414..44782442 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021480593.2 → XP_021336268.1  BTB/POZ domain-containing protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8M9Q9R1
      Conserved Domains (4) summary
      cd14822
      Location:137 → 195
      BACK_BTBD9_like; BACK-like Domain C-terminal to BTB in BTB/POZ domain-containing protein 9 and similar proteins
      pfam00651
      Location:33 → 137
      BTB; BTB/POZ domain
      pfam00754
      Location:324 → 406
      F5_F8_type_C; F5/8 type C domain
      cl23730
      Location:473 → 544
      F5_F8_type_C; F5/8 type C domain
    Nucleotide Protein Strain
    Heading Accession and Version

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