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    SNR17A [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164981, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SNR17A
    Primary source
    SGD:S000007294
    Locus tag
    YNCO0025W
    See related
    AllianceGenome:SGD:S000007294
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables rRNA binding activity. Involved in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Located in nucleolus. Part of 90S preribosome; box C/D methylation guide snoRNP complex; and small-subunit processome. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNR17A in Genome Data Viewer
    Location:
    chromosome: XV
    Exon count:
    1
    Sequence:
    Chromosome: XV; NC_001147.6 (780107..780596)

    Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene putative serine/threonine protein kinase KIN4 Neighboring gene ribosomal 60S subunit protein L33B Neighboring gene Irc13p Neighboring gene dihydrofolate reductase Neighboring gene oxysterol-binding protein related protein HES1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001147.6

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An experimental study of Saccharomyces cerevisiae U3 snRNA conformation in solution. Ségault V, et al. Nucleic Acids Res, 1992 Jul 11. PMID 1630915, Free PMC Article
    2. Secondary structure of the yeast Saccharomyces cerevisiae pre-U3A snoRNA and its implication for splicing efficiency. Mougin A, et al. RNA, 1996 Nov. PMID 8903339, Free PMC Article
    3. An intron in the genes for U3 small nucleolar RNAs of the yeast Saccharomyces cerevisiae. Myslinski E, et al. Science, 1990 Mar 9. PMID 1690452
    4. Yeast U3 localization and correct sequence (snR17a) and promotor activity (snR17b) identified by homology search. Dandekar T. DNA Seq, 1991. PMID 1773061
    5. The yeast homologue of U3 snRNA. Hughes JM, et al. EMBO J, 1987 Jul. PMID 3308452, Free PMC Article

    See all (53) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • Small nucleolar RNA (snoRNA) U3; part of Small ribosomal SubUnit (SSU) processome; SNR17B also encodes snoRNA U3

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables RNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables rRNA binding IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables rRNA binding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome HDA PubMed 
    part_of 90S preribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of box C/D methylation guide snoRNP complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of box C/D methylation guide snoRNP complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001147.6 Reference assembly

      Range
      780107..780596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132262.1 RNA Sequence

      Status: REVIEWED

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