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    SNR19 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164965, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SNR19
    Primary source
    SGD:S000007295
    Locus tag
    YNCN0005C
    See related
    AllianceGenome:SGD:S000007295
    Gene type
    ncRNA
    RNA name
    snRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables pre-mRNA 5'-splice site binding activity. Involved in mRNA 5'-splice site recognition. Part of U1 snRNP and commitment complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNR19 in Genome Data Viewer
    Location:
    chromosome: XIV
    Exon count:
    1
    Sequence:
    Chromosome: XIV; NC_001146.8 (230105..230672, complement)

    Chromosome XIV - NC_001146.8Genomic Context describing neighboring genes Neighboring gene cysteine protease ATG4 Neighboring gene RNA polymerase II subunit A C-terminal domain phosphatase Neighboring gene ribonuclease P/MRP protein subunit POP1 Neighboring gene adenylosuccinate synthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001146.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. U1 snRNP can influence 3'-splice site selection as well as 5'-splice site selection. Goguel V, et al. Genes Dev, 1991 Aug. PMID 1831174
    2. Yeast U1 snRNP-pre-mRNA complex formation without U1snRNA-pre-mRNA base pairing. Du H, et al. RNA, 2001 Jan. PMID 11214175, Free PMC Article
    3. A role for the Psi-U mismatch in the recognition of the 5' splice site of yeast introns by the U1 small nuclear ribonucleoprotein particle. Libri D, et al. J Biol Chem, 2002 May 17. PMID 11877437
    4. U1 small nuclear ribonucleoprotein particle-protein interactions are revealed in Saccharomyces cerevisiae by in vivo competition assays. Stutz F, et al. Mol Cell Biol, 1993 Apr. PMID 8455601, Free PMC Article
    5. Saccharomyces cerevisiae has a U1-like small nuclear RNA with unexpected properties. Siliciano PG, et al. Science, 1987 Sep 18. PMID 3306922

    See all (46) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • U1 spliceosomal RNA (U1 snRNA); snRNA U1 homolog

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables pre-mRNA 5'-splice site binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables pre-mRNA 5'-splice site binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pre-mRNA 5'-splice site binding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 5'-splice site recognition IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in mRNA 5'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA splicing, via spliceosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of commitment complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001146.8 Reference assembly

      Range
      230105..230672 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132250.1 RNA Sequence

      Status: REVIEWED

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