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    4930533I22Rik RIKEN cDNA 4930533I22 gene [ Mus musculus (house mouse) ]

    Gene ID: 434018, updated on 17-Aug-2024

    Summary

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    Official Symbol
    4930533I22Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930533I22 geneprovided by MGI
    Primary source
    MGI:MGI:3612486
    See related
    AllianceGenome:MGI:3612486
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 3.0) See more
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    Genomic context

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    See 4930533I22Rik in Genome Data Viewer
    Location:
    6 B3; 6 27.82 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (57441058..57476515)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (57464073..57506503)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 20 Neighboring gene vomeronasal 1 receptor, pseudogene 11 Neighboring gene predicted gene, 50628 Neighboring gene protein phosphatase 1K (PP2C domain containing) Neighboring gene STARR-positive B cell enhancer ABC_E342 Neighboring gene STARR-seq mESC enhancer starr_16003 Neighboring gene STARR-positive B cell enhancer ABC_E9666 Neighboring gene hect domain and RLD 6 Neighboring gene ribosomal protein S27 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Potential readthrough

    Included gene: Herc6

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC434018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      57441058..57476515
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001785264.1 RNA Sequence

    2. XR_377720.2 RNA Sequence

    3. XR_869131.1 RNA Sequence

    4. XR_001785265.1 RNA Sequence

    5. XR_377716.4 RNA Sequence

    6. XR_377718.4 RNA Sequence

    7. XR_377719.4 RNA Sequence

    8. XR_869127.3 RNA Sequence

    9. XR_869130.3 RNA Sequence

    10. XR_869129.3 RNA Sequence

    11. XR_003956445.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001029879.1: Suppressed sequence

      Description
      NM_001029879.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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