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    Gm13446 predicted gene 13446 [ Mus musculus (house mouse) ]

    Gene ID: 100042194, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm13446provided by MGI
    Official Full Name
    predicted gene 13446provided by MGI
    Primary source
    MGI:MGI:3649869
    See related
    Ensembl:ENSMUSG00000086555 AllianceGenome:MGI:3649869
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in bladder adult (RPKM 3.4), cortex adult (RPKM 2.0) and 10 other tissues See more
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    Genomic context

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    See Gm13446 in Genome Data Viewer
    Location:
    2 B; 2 23.73 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (35439546..35448714, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (35549534..35558702, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E11129 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:35351283-35351392 Neighboring gene STARR-positive B cell enhancer ABC_E806 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:35354988-35355189 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:35359725-35359878 Neighboring gene STARR-seq mESC enhancer starr_04284 Neighboring gene predicted gene 13445 Neighboring gene predicted gene, 35260 Neighboring gene predicted gene, 35202 Neighboring gene STARR-seq mESC enhancer starr_04285 Neighboring gene disabled 2 interacting protein Neighboring gene STARR-seq mESC enhancer starr_04286 Neighboring gene STARR-seq mESC enhancer starr_04289 Neighboring gene STARR-seq mESC enhancer starr_04292 Neighboring gene tubulin tyrosine ligase-like family, member 11 Neighboring gene RIKEN cDNA 9030204H09 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:35686851-35687121 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:35696893-35697094 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:35697143-35697252 Neighboring gene predicted gene 10829

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045894.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK138201, AW125555
      Related
      ENSMUST00000124555.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      35439546..35448714 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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