U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC01847 long intergenic non-protein coding RNA 1847 [ Homo sapiens (human) ]

    Gene ID: 101927766, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01847provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1847provided by HGNC
    Primary source
    HGNC:HGNC:52662
    See related
    Ensembl:ENSG00000253311 AllianceGenome:HGNC:52662
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC01847 in Genome Data Viewer
    Location:
    5q33.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (159776772..159871384, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (160305164..160399778, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (159203779..159298391, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377687 Neighboring gene uncharacterized LOC105377688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:159200044-159200558 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:159200559-159201071 Neighboring gene NANOG hESC enhancer GRCh37_chr5:159201487-159201994 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:159205410-159206609 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16573 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:159300789-159301988 Neighboring gene adrenoceptor alpha 1B Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16574 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:159343446-159344062 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:159344063-159344679 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:159355809-159356308 Neighboring gene uncharacterized LOC101927790 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 40

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109891.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011343, AC011348
      Related
      ENST00000522627.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      159776772..159871384 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      160305164..160399778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)