U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    R3hcc1l R3H domain and coiled-coil containing 1 like [ Mus musculus (house mouse) ]

    Gene ID: 52013, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    R3hcc1lprovided by MGI
    Official Full Name
    R3H domain and coiled-coil containing 1 likeprovided by MGI
    Primary source
    MGI:MGI:1196316
    See related
    Ensembl:ENSMUSG00000025184 AllianceGenome:MGI:1196316
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    GIDRP86; Gidrp88; C10orf28; D19Ertd386e; 1700036B12Rik
    Summary
    Predicted to be part of exon-exon junction complex. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; genitourinary system; and skin. Orthologous to human R3HCC1L (R3H domain and coiled-coil containing 1 like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in testis adult (RPKM 6.2), bladder adult (RPKM 4.3) and 28 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See R3hcc1l in Genome Data Viewer
    Location:
    19 C3; 19 36.47 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (42506419..42580713)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (42517980..42592274)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 41850 Neighboring gene STARR-positive B cell enhancer ABC_E7660 Neighboring gene predicted gene, 41851 Neighboring gene lysyl oxidase-like 4 Neighboring gene STARR-seq mESC enhancer starr_46188 Neighboring gene predicted gene, 25216

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    2. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
    3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    4. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2) 

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of exon-exon junction complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of exon-exon junction complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    coiled-coil domain-containing protein R3HCC1L
    Names
    growth inhibition and differentiation related protein 86
    growth inhibition and differentiation-related protein 88 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177464.4 → NP_803415.1  coiled-coil domain-containing protein R3HCC1L

      See identical proteins and their annotated locations for NP_803415.1

      Status: VALIDATED

      Source sequence(s)
      AC124552
      Consensus CDS
      CCDS29829.1
      UniProtKB/Swiss-Prot
      Q3UGJ8, Q5U5U8, Q8BJM3
      Related
      ENSMUSP00000026188.4, ENSMUST00000026188.10
      Conserved Domains (1) summary
      cd12428
      Location:627 → 691
      RRM_PARN; RNA recognition motif in poly(A)-specific ribonuclease PARN and similar proteins

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      42506419..42580713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527182.4 → XP_006527245.1  coiled-coil domain-containing protein R3HCC1L isoform X1

      Conserved Domains (1) summary
      cl17169
      Location:107 → 171
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BJM3.1 GenPept UniProtKB/Swiss-Prot:Q8BJM3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools