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    TfIIA-S-2 TfIIA-S-2 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31048, updated on 9-Dec-2024

    Summary

    Official Symbol
    TfIIA-S-2provided by FlyBase
    Official Full Name
    TfIIA-S-2provided by FlyBase
    Primary source
    FLYBASE:FBgn0040338
    Locus tag
    Dmel_CG11639
    See related
    AllianceGenome:FB:FBgn0040338
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG11639; Dmel\CG11639; EG:BACR7A4.7; TFIIA; tfiia-s-2; TFIIA-S-2
    Summary
    Predicted to enable RNA polymerase II general transcription initiation factor activity and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be part of transcription factor TFIIA complex. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See TfIIA-S-2 in Genome Data Viewer
    Location:
    1E1-1E1; 1-0.1 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (1011101..1011643, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (905134..905676, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45476 Neighboring gene uncharacterized protein Neighboring gene suppressor of white-apricot Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables TBP-class protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in RNA polymerase II preinitiation complex assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in transcription initiation at RNA polymerase II promoter ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIIA complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of transcription factor TFIIA complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of transcription factor TFIIA complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 

    General protein information

    Preferred Names
    TfIIA-S-2
    Names
    CG11639-PA
    TfIIA-S-2-PA

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      1011101..1011643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130521.1NP_569877.1  TfIIA-S-2 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_569877.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D3DMX0, D3DMX1, Q9W5B9
      UniProtKB/TrEMBL
      H0RNC2
      Related
      FBpp0070177, FBtr0070184
      Conserved Domains (3) summary
      cd10145
      Location:250
      TFIIA_gamma_N; Gamma subunit of transcription initiation factor IIA, N-terminal helical domain
      COG5123
      Location:3103
      TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]
      pfam02751
      Location:5399
      TFIIA_gamma_C; Transcription initiation factor IIA, gamma subunit