U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Peg3 paternally expressed 3 [ Mus musculus (house mouse) ]

    Gene ID: 18616, updated on 3-Dec-2024

    Summary

    Official Symbol
    Peg3provided by MGI
    Official Full Name
    paternally expressed 3provided by MGI
    Primary source
    MGI:MGI:104748
    See related
    Ensembl:ENSMUSG00000002265 AllianceGenome:MGI:104748
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Pw1; End4; ASF-1; Gcap4; Zfp102; mKIAA0287
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Located in autophagosome and nucleus. Is expressed in several structures, including alimentary system; brain; branchial arch; genitourinary system; and sensory organ. Orthologous to human PEG3 (paternally expressed 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in placenta adult (RPKM 77.8), limb E14.5 (RPKM 49.2) and 12 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Peg3 in Genome Data Viewer
    Location:
    7 A1; 7 3.89 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (6706891..6733443, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (6703892..6730462, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger, imprinted 2 Neighboring gene zinc finger, imprinted 1 Neighboring gene STARR-seq mESC enhancer starr_17985 Neighboring gene Peg3 opposite strand Neighboring gene ubiquitin specific peptidase 29 Neighboring gene Tctex1 domain containing 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_17987 Neighboring gene STARR-seq mESC enhancer starr_17989 Neighboring gene microRNA 3099

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (4) 
    • Targeted (7)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    General protein information

    Preferred Names
    paternally-expressed gene 3 protein
    Names
    granule cell antiserum positive 4
    paternally expressed gene 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417064.1NP_001403993.1  paternally-expressed gene 3 protein isoform a

      Status: VALIDATED

      Source sequence(s)
      AC157657
      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
    2. NM_001417065.1NP_001403994.1  paternally-expressed gene 3 protein isoform a

      Status: VALIDATED

      Source sequence(s)
      AC157657
      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
    3. NM_001417066.1NP_001403995.1  paternally-expressed gene 3 protein isoform a

      Status: VALIDATED

      Source sequence(s)
      AC157657
      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
    4. NM_001417068.1NP_001403997.1  paternally-expressed gene 3 protein isoform a

      Status: VALIDATED

      Source sequence(s)
      AC157657
      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
    5. NM_001417070.1NP_001403999.1  paternally-expressed gene 3 protein isoform a

      Status: VALIDATED

      Source sequence(s)
      AC157657
      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
    6. NM_001417071.1NP_001404000.1  paternally-expressed gene 3 protein isoform b

      Status: VALIDATED

      Source sequence(s)
      AC157657
      UniProtKB/TrEMBL
      Q0P5Y8
    7. NM_001417072.1NP_001404001.1  paternally-expressed gene 3 protein isoform b

      Status: VALIDATED

      Source sequence(s)
      AC157657
      UniProtKB/TrEMBL
      Q0P5Y8
    8. NM_008817.3NP_032843.2  paternally-expressed gene 3 protein isoform a

      See identical proteins and their annotated locations for NP_032843.2

      Status: VALIDATED

      Source sequence(s)
      AC157657
      Consensus CDS
      CCDS20783.1
      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
      Related
      ENSMUSP00000050750.5, ENSMUST00000051209.11
      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      6706891..6733443 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242211.2XP_030098071.1  paternally-expressed gene 3 protein isoform X3

      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type
    2. XM_017322030.3XP_017177519.1  paternally-expressed gene 3 protein isoform X2

      UniProtKB/TrEMBL
      A0A5F8MPW9
      Conserved Domains (3) summary
      PHA03169
      Location:9431151
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:408428
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:12181240
      zf-C2H2; Zinc finger, C2H2 type
    3. XM_036152771.1XP_036008664.1  paternally-expressed gene 3 protein isoform X3

      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type
    4. XM_036152776.1XP_036008669.1  paternally-expressed gene 3 protein isoform X4

      UniProtKB/TrEMBL
      Q0P5Y8
      Conserved Domains (3) summary
      PHA03169
      Location:718936
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:183203
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:10031025
      zf-C2H2; Zinc finger, C2H2 type
    5. XM_030242212.1XP_030098072.1  paternally-expressed gene 3 protein isoform X3

      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type
    6. XM_036152774.1XP_036008667.1  paternally-expressed gene 3 protein isoform X3

      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type
    7. XM_036152773.1XP_036008666.1  paternally-expressed gene 3 protein isoform X3

      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001010988.1: Suppressed sequence

      Description
      NM_001010988.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.