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    1700003D09Rik RIKEN cDNA 1700003D09 gene [ Mus musculus (house mouse) ]

    Gene ID: 69338, updated on 17-Aug-2024

    Summary

    Official Symbol
    1700003D09Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700003D09 geneprovided by MGI
    Primary source
    MGI:MGI:1916588
    See related
    Ensembl:ENSMUSG00000085944 AllianceGenome:MGI:1916588
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in large intestine adult (RPKM 17.2), colon adult (RPKM 17.2) and 10 other tissues See more
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    Genomic context

    See 1700003D09Rik in Genome Data Viewer
    Location:
    11 D; 11 61.75 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (98241544..98249109, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (98350718..98358283, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33099 Neighboring gene STARR-positive B cell enhancer ABC_E1147 Neighboring gene predicted gene, 38970 Neighboring gene protein phosphatase 1, regulatory inhibitor subunit 1B Neighboring gene STARR-positive B cell enhancer ABC_E7055 Neighboring gene STARR-positive B cell enhancer ABC_E7056 Neighboring gene StAR related lipid transfer domain containing 3 Neighboring gene titin-cap

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045477.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL591390
      Related
      ENSMUST00000141929.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      98241544..98249109 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)