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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001177751.2 → NP_001171222.1 TSC22 domain family protein 1 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (3) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AC142266, AI841546, AK147039, BY720238
- Consensus CDS
-
CCDS49545.1
- UniProtKB/TrEMBL
-
D3YW86
- Related
- ENSMUSP00000099140.3, ENSMUST00000101618.9
- Conserved Domains (1) summary
-
- pfam01166
Location:22 → 68
- TSC22; TSC-22/dip/bun family
-
NM_001310646.1 → NP_001297575.1 TSC22 domain family protein 1 isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and contains an alternate splice structure in its 5' coding region compared to variant 1. The encoded isoform (4) is shorter than isoform 1.
- Source sequence(s)
-
AC134842, AI841546, AW546174, CX220910
- Consensus CDS
-
CCDS79344.1
- UniProtKB/Swiss-Prot
- P62500, Q00992, Q69Z44, Q6PDK1, Q9EQN4
- UniProtKB/TrEMBL
-
D3Z0V7
- Related
- ENSMUSP00000106513.2, ENSMUST00000110888.8
- Conserved Domains (2) summary
-
- PHA03247
Location:486 → 796
- PHA03247; large tegument protein UL36; Provisional
- pfam01166
Location:910 → 956
- TSC22; TSC-22/dip/bun family
-
NM_001310647.1 → NP_001297576.1 TSC22 domain family protein 1 isoform 5
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks the 5' and central coding regions, and initiates translation at downstream start codon, compared to variant 1. The encoded isoform (5) is significantly shorter than isoform 1.
- Source sequence(s)
-
AI841546, AW546174, CX220910
- Consensus CDS
-
CCDS79345.1
- UniProtKB/TrEMBL
-
H3BLI9
- Related
- ENSMUSP00000135296.2, ENSMUST00000177207.2
- Conserved Domains (1) summary
-
- cl40461
Location:1 → 74
- ZIP_TSC22D-like; leucine zipper found in the TSC22 domain leucine zipper transcription factors, c-Myc-binding protein, and similar proteins
-
NM_009366.4 → NP_033392.1 TSC22 domain family protein 1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AI841546, AK147039
- Consensus CDS
-
CCDS27286.1
- UniProtKB/TrEMBL
-
Q3UXU0
- Related
- ENSMUSP00000022587.10, ENSMUST00000022587.10
- Conserved Domains (1) summary
-
- cd21938
Location:53 → 131
- ZIP_TSC22D1; leucine zipper domain found in TSC22 domain family protein 1
-
NM_207652.3 → NP_997535.2 TSC22 domain family protein 1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AI841546, AK147039, BC058660
- Consensus CDS
-
CCDS27285.2
- UniProtKB/Swiss-Prot
- P62500, Q00992, Q69Z44, Q6PDK1, Q9EQN4
- UniProtKB/TrEMBL
-
E9QLZ1
- Related
- ENSMUSP00000044517.9, ENSMUST00000048371.15
- Conserved Domains (2) summary
-
- PHA03247
Location:568 → 878
- PHA03247; large tegument protein UL36; Provisional
- pfam01166
Location:992 → 1038
- TSC22; TSC-22/dip/bun family
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000080.7 Reference GRCm39 C57BL/6J
- Range
-
76652401..76745205
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017315943.2 → XP_017171432.1 TSC22 domain family protein 1 isoform X2
- UniProtKB/Swiss-Prot
- P62500, Q00992, Q69Z44, Q6PDK1, Q9EQN4
- UniProtKB/TrEMBL
-
E9QLZ1
- Conserved Domains (2) summary
-
- PHA03247
Location:568 → 878
- PHA03247; large tegument protein UL36; Provisional
- pfam01166
Location:992 → 1038
- TSC22; TSC-22/dip/bun family
-
XM_017315942.2 → XP_017171431.1 TSC22 domain family protein 1 isoform X2
- UniProtKB/Swiss-Prot
- P62500, Q00992, Q69Z44, Q6PDK1, Q9EQN4
- UniProtKB/TrEMBL
-
E9QLZ1
- Conserved Domains (2) summary
-
- PHA03247
Location:568 → 878
- PHA03247; large tegument protein UL36; Provisional
- pfam01166
Location:992 → 1038
- TSC22; TSC-22/dip/bun family
-
XM_006518803.4 → XP_006518866.1 TSC22 domain family protein 1 isoform X6
- UniProtKB/Swiss-Prot
- P62500, Q00992, Q69Z44, Q6PDK1, Q9EQN4
- UniProtKB/TrEMBL
-
D3Z0V7
- Conserved Domains (2) summary
-
- PHA03247
Location:486 → 796
- PHA03247; large tegument protein UL36; Provisional
- pfam01166
Location:910 → 956
- TSC22; TSC-22/dip/bun family
-
XM_017315945.2 → XP_017171434.1 TSC22 domain family protein 1 isoform X5
- UniProtKB/Swiss-Prot
- P62500, Q00992, Q69Z44, Q6PDK1, Q9EQN4
- Conserved Domains (1) summary
-
- PHA03247
Location:568 → 878
- PHA03247; large tegument protein UL36; Provisional
-
XM_006518799.3 → XP_006518862.1 TSC22 domain family protein 1 isoform X1
- UniProtKB/Swiss-Prot
- P62500, Q00992, Q69Z44, Q6PDK1, Q9EQN4
- Conserved Domains (1) summary
-
- PHA03247
Location:568 → 878
- PHA03247; large tegument protein UL36; Provisional
-
XM_006518801.3 → XP_006518864.1 TSC22 domain family protein 1 isoform X4
- UniProtKB/Swiss-Prot
- P62500, Q00992, Q69Z44, Q6PDK1, Q9EQN4
- Conserved Domains (1) summary
-
- PHA03247
Location:568 → 878
- PHA03247; large tegument protein UL36; Provisional
-
XM_006518800.3 → XP_006518863.1 TSC22 domain family protein 1 isoform X3
- UniProtKB/Swiss-Prot
- P62500, Q00992, Q69Z44, Q6PDK1, Q9EQN4
- Conserved Domains (1) summary
-
- PHA03247
Location:568 → 878
- PHA03247; large tegument protein UL36; Provisional
-
XM_036158535.1 → XP_036014428.1 TSC22 domain family protein 1 isoform X7
- UniProtKB/Swiss-Prot
- P62500, Q00992, Q69Z44, Q6PDK1, Q9EQN4
- Conserved Domains (1) summary
-
- PHA03247
Location:486 → 796
- PHA03247; large tegument protein UL36; Provisional
RNA
-
XR_004938376.1 RNA Sequence
-
XR_003950835.1 RNA Sequence
-
XR_001781104.2 RNA Sequence
-
XR_001781105.2 RNA Sequence
-
XR_383154.3 RNA Sequence
-
XR_003950836.1 RNA Sequence
-
XR_004938375.1 RNA Sequence
-
XR_383156.3 RNA Sequence
-
XR_003950837.1 RNA Sequence