Mup5 major urinary protein 5 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Mup5provided by RGD
Official Full Name: major urinary protein 5provided by RGD
Primary source: RGD:735107
See related: AllianceGenome:RGD:735107
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: PGCL6
Summary: Predicted to enable pheromone binding activity and small molecule binding activity. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
Expression: Restricted expression toward (RPKM 14142.4) See more
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Genomic context

Location:: 5q24

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	5	NC_086023.1 (79996023..79999893, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	5	NC_051340.1 (75201324..75204903, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	5	NC_005104.4 (77744217..77903161, complement)

Chromosome 5 - NC_086023.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables endopeptidase inhibitor activity	NAS Non-traceable Author Statement more info	PubMed
enables pheromone binding	IEA Inferred from Electronic Annotation more info
enables small molecule binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: major urinary protein 5

Names: alpha-2u globulin PGCL5; alpha-2u globulin PGCL6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_203325.2 → NP_976070.2 major urinary protein 5 precursor

Status: VALIDATED

Source sequence(s)

JAXUCZ010000005

UniProtKB/TrEMBL

A6KDY3, Q9JJI1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086023.1 Reference GRCr8

Range

79996023..79999893 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_039109478.2 → XP_038965406.1 major urinary protein 5 isoform X1

UniProtKB/TrEMBL

A0A8I6AJN1, Q9JJI1

Conserved Domains (1) summary

cd19428
Location:69 → 224

lipocalin_MUP-like; major urinary proteins (MUPs) and similar proteins