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    Stoml3 stomatin (Epb7.2)-like 3 [ Mus musculus (house mouse) ]

    Gene ID: 229277, updated on 9-Dec-2024

    Summary

    Official Symbol
    Stoml3provided by MGI
    Official Full Name
    stomatin (Epb7.2)-like 3provided by MGI
    Primary source
    MGI:MGI:2388072
    See related
    Ensembl:ENSMUSG00000027744 AllianceGenome:MGI:2388072
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    sro; SLP3; Epb7.2l
    Summary
    Acts upstream of or within signal transduction. Located in cilium; membrane raft; and neuron projection. Is expressed in olfactory epithelium. Orthologous to human STOML3 (stomatin like 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in frontal lobe adult (RPKM 4.2), ovary adult (RPKM 1.9) and 1 other tissue See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Stoml3 in Genome Data Viewer
    Location:
    3 C; 3 25.21 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (53396128..53416284)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (53488707..53508863)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_07656 Neighboring gene STARR-seq mESC enhancer starr_07657 Neighboring gene predicted gene 16206 Neighboring gene NHL repeat containing 3 Neighboring gene proline and serine rich 1 Neighboring gene predicted gene, 23675 Neighboring gene Fras1 related extracellular matrix protein 2 Neighboring gene STARR-seq mESC enhancer starr_07661 Neighboring gene STARR-seq mESC enhancer starr_07663 Neighboring gene STARR-seq mESC enhancer starr_07665 Neighboring gene STARR-seq mESC enhancer starr_07666

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane raft IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in neuron projection IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    stomatin-like protein 3
    Names
    SLP-3
    stomatin related olfactory protein SRO
    stomatin-related olfactory protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153156.2NP_694796.1  stomatin-like protein 3

      See identical proteins and their annotated locations for NP_694796.1

      Status: VALIDATED

      Source sequence(s)
      AC158162
      Consensus CDS
      CCDS17347.1
      UniProtKB/Swiss-Prot
      Q66JM3, Q6PE84, Q8K4P4
      UniProtKB/TrEMBL
      B2RS16
      Related
      ENSMUSP00000029307.4, ENSMUST00000029307.4
      Conserved Domains (2) summary
      smart00244
      Location:45200
      PHB; prohibitin homologues
      cl19107
      Location:69267
      SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      53396128..53416284
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)