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    Cxhxorf38 similar to human chromosome X open reading frame 38 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 317344, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cxhxorf38provided by RGD
    Official Full Name
    similar to human chromosome X open reading frame 38provided by RGD
    Primary source
    RGD:1565685
    See related
    EnsemblRapid:ENSRNOG00000023187 AllianceGenome:RGD:1565685
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565685
    Summary
    Predicted to be located in mitochondrion. Orthologous to human CXorf38 (chromosome X open reading frame 38). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 52.2), Lung (RPKM 42.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cxhxorf38 in Genome Data Viewer
    Location:
    Xq12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (12800935..12823632)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (10128070..10150904)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (11082668..11105588)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL19-like Neighboring gene mediator complex subunit 14 Neighboring gene mitochondrial pyruvate carrier 1-like Neighboring gene ATPase H+ transporting accessory protein 2 Neighboring gene uncharacterized LOC120099278

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. Morgenstern M, et al. Cell Metab, 2021 Dec 7. PMID 34800366, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein CXorf38 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126286.2 → NP_001119758.2  uncharacterized protein CXorf38 homolog

      See identical proteins and their annotated locations for NP_001119758.2

      Status: PROVISIONAL

      Source sequence(s)
      BC161948
      UniProtKB/TrEMBL
      A6JZZ9, B1WBZ6
      Related
      ENSRNOP00000076260.1, ENSRNOT00000093745.3
      Conserved Domains (1) summary
      pfam15112
      Location:9 → 317
      DUF4559; Domain of unknown function (DUF4559)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      12800935..12823632
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017602061.3 → XP_017457550.1  uncharacterized protein CXorf38 homolog isoform X2

    2. XM_063280042.1 → XP_063136112.1  uncharacterized protein CXorf38 homolog isoform X1

      UniProtKB/TrEMBL
      A6JZZ9, B1WBZ6

    3. XM_063280043.1 → XP_063136113.1  uncharacterized protein CXorf38 homolog isoform X1

      UniProtKB/TrEMBL
      A6JZZ9, B1WBZ6

    4. XM_063280044.1 → XP_063136114.1  uncharacterized protein CXorf38 homolog isoform X3

    5. XM_039099758.2 → XP_038955686.1  uncharacterized protein CXorf38 homolog isoform X4

      Conserved Domains (1) summary
      pfam15112
      Location:1 → 198
      DUF4559; Domain of unknown function (DUF4559)

    RNA

    1. XR_005497979.2 RNA Sequence

    2. XR_005497980.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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