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    Zfp939 zinc finger protein 939 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690136, updated on 9-Dec-2024

    Summary

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    Symbol
    Zfp939provided by RGD
    Full Name
    zinc finger protein 939provided by RGD
    Primary source
    RGD:1584032
    See related
    EnsemblRapid:ENSRNOG00000064970 AllianceGenome:RGD:1584032
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Zfp975; RGD1584023
    Summary
    Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 35.1), Liver (RPKM 33.0) and 9 other tissues See more
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    Genomic context

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    See Zfp939 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (100254027..100278418)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (91128356..91142632)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (95423646..95437146)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 470 Neighboring gene caspase activity and apoptosis inhibitor 1, pseudogene 1 Neighboring gene family with sequence similarity 32, member A like 1 Neighboring gene uncharacterized LOC102548014 Neighboring gene uncharacterized LOC134485114 Neighboring gene uncharacterized LOC134485115

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 939; zinc finger protein OZF-like
    Names
    zinc finger protein 33B-like
    zinc finger protein 975

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      100254027..100278418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006228931.5 → XP_006228993.1  zinc finger protein OZF-like isoform X1

      See identical proteins and their annotated locations for XP_006228993.1

      UniProtKB/TrEMBL
      A0A0G2K1H6
      Related
      ENSRNOP00000071844.2, ENSRNOT00000079174.3
      Conserved Domains (5) summary
      smart00349
      Location:4 → 63
      KRAB; krueppel associated box
      COG5048
      Location:208 → 531
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:419 → 439
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 43
      KRAB; KRAB box
      pfam13465
      Location:238 → 260
      zf-H2C2_2; Zinc-finger double domain

    2. XM_039100879.2 → XP_038956807.1  zinc finger protein OZF-like isoform X3

      Conserved Domains (3) summary
      smart00349
      Location:4 → 63
      KRAB; krueppel associated box
      COG5048
      Location:170 → 493
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:381 → 401
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_017590076.3 → XP_017445565.1  zinc finger protein OZF-like isoform X2

    RNA

    1. XR_010062993.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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