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    Neu3 neuraminidase 3 [ Mus musculus (house mouse) ]

    Gene ID: 50877, updated on 27-Nov-2024

    Summary

    Official Symbol
    Neu3provided by MGI
    Official Full Name
    neuraminidase 3provided by MGI
    Primary source
    MGI:MGI:1355305
    See related
    Ensembl:ENSMUSG00000035239 AllianceGenome:MGI:1355305
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Enables exo-alpha-sialidase activity. Involved in ganglioside catabolic process. Located in early endosome membrane; external side of plasma membrane; and recycling endosome membrane. Is expressed in brain. Orthologous to human NEU3 (neuraminidase 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in thymus adult (RPKM 13.1), ovary adult (RPKM 8.7) and 19 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Neu3 in Genome Data Viewer
    Location:
    7 E1; 7 54.15 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (99460646..99477579, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (99811434..99828457, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene UTP18, small subunit (SSU) processome component, homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_19661 Neighboring gene olfactory receptor family 2 subfamily AT member 1 Neighboring gene olfactory receptor enhancer Ikaria Neighboring gene STARR-positive B cell enhancer ABC_E3735 Neighboring gene STARR-seq mESC enhancer starr_19662 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:106976805-106976914 Neighboring gene STARR-positive B cell enhancer ABC_E3736 Neighboring gene signal peptidase complex subunit 2 homolog (S. cerevisiae) Neighboring gene STARR-positive B cell enhancer ABC_E1347 Neighboring gene X-ray radiation resistance associated 1 Neighboring gene predicted gene, 38405

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (1)  1 citation

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables alpha-sialidase activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    enables exo-alpha-sialidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables exo-alpha-sialidase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables exo-alpha-sialidase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables exo-alpha-sialidase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in caveola IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in early endosome membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in early endosome membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in external side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in lysosomal membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in lysosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in recycling endosome membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in recycling endosome membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    sialidase-3
    Names
    N-acetyl-alpha-neuraminidase 3
    Sialidase 3 (Membrane sialidase) (Ganglioside sialidase) (N-acetyl-alpha-neuraminidase 3)
    ganglioside sialidase
    membrane sialidase
    NP_001405392.1
    NP_057929.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418463.1NP_001405392.1  sialidase-3

      Status: VALIDATED

      Source sequence(s)
      AC115040
      UniProtKB/Swiss-Prot
      Q9JMH7
      UniProtKB/TrEMBL
      Q543I9
      Related
      ENSMUSP00000160085.1, ENSMUST00000250002.1
    2. NM_016720.3NP_057929.1  sialidase-3

      See identical proteins and their annotated locations for NP_057929.1

      Status: VALIDATED

      Source sequence(s)
      AC115040
      Consensus CDS
      CCDS21489.1
      UniProtKB/Swiss-Prot
      Q9JMH7
      UniProtKB/TrEMBL
      Q543I9
      Related
      ENSMUSP00000045222.7, ENSMUST00000036331.7
      Conserved Domains (1) summary
      cd15482
      Location:11402
      Sialidase_non-viral; Non-viral sialidases

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      99460646..99477579 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)