U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    HOXC6 homeobox C6 [ Ovis aries (sheep) ]

    Gene ID: 443349, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    HOXC6
    Gene description
    homeobox C6
    See related
    EnsemblRapid:ENSOARG00020017976
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ovis aries
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See HOXC6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 3 NC_056056.1 (132484640..132495940, complement)

    Chromosome 3 - NC_056056.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105611011 Neighboring gene uncharacterized LOC105611012 Neighboring gene homeobox C5 Neighboring gene uncharacterized LOC121819101 Neighboring gene uncharacterized LOC132659619 Neighboring gene homeobox C8

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_056056.1 Chromosome 3 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anterior/posterior pattern specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    homeobox protein Hox-C6
    Names
    Antennapedia-type homeotic factor
    homeo box C6

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001009335.1 → NP_001009335.1  homeobox protein Hox-C6

      See identical proteins and their annotated locations for NP_001009335.1

      Status: PROVISIONAL

      Source sequence(s)
      U33049
      UniProtKB/Swiss-Prot
      P49925
      Related
      ENSOARP00020057537.1, ENSOART00020069750.1
      Conserved Domains (1) summary
      pfam00046
      Location:63 → 116
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Genomic

    1. NC_056056.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

      Range
      132484640..132495940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_060411610.1 → XP_060267593.1  homeobox protein Hox-C6 isoform X3

    2. XM_042245227.2 → XP_042101161.1  homeobox protein Hox-C6 isoform X2

      Related
      ENSOARP00020022938.2, ENSOART00020027661.2
      Conserved Domains (1) summary
      pfam00046
      Location:149 → 202
      Homeobox; Homeobox domain

    3. XM_042245226.1 → XP_042101160.1  homeobox protein Hox-C6 isoform X1

      Related
      ENSOARP00020043532.1, ENSOART00020048450.1
      Conserved Domains (1) summary
      pfam00046
      Location:153 → 206
      Homeobox; Homeobox domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P49925.1 GenPept UniProtKB/Swiss-Prot:P49925

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials