Gpn3 GPN-loop GTPase 3 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Gpn3provided by MGI
Official Full Name: GPN-loop GTPase 3provided by MGI
Primary source: MGI:MGI:1289326
See related: Ensembl:ENSMUSG00000029464 AllianceGenome:MGI:1289326
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Atpbd1c; D5Ertd708e; A930018B01Rik
Summary: Predicted to enable GTPase activity. Predicted to be part of protein-containing complex. Orthologous to human GPN3 (GPN-loop GTPase 3). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Ubiquitous expression in liver E14 (RPKM 23.5), liver E14.5 (RPKM 21.0) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 5 F; 5 62.33 cM

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	5	NC_000071.7 (122510571..122520834)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	5	NC_000071.6 (122372508..122382771)

Chromosome 5 - NC_000071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

D5Ertd708e (e-PCR), detects polymorphism
- UniSTS:167464

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables GTPase activity	IBA Inferred from Biological aspect of Ancestor more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of protein-containing complex	IEA Inferred from Electronic Annotation more info
part_of protein-containing complex	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: GPN-loop GTPase 3

Names: ATP-binding domain 1 family member C; protein x 0004

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_024216.2 → NP_077178.1 GPN-loop GTPase 3

See identical proteins and their annotated locations for NP_077178.1

Status: VALIDATED

Source sequence(s)

AC113285

Consensus CDS

CCDS19647.1

UniProtKB/Swiss-Prot

Q8BU32, Q9D3W4

Related

ENSMUSP00000031420.5, ENSMUST00000031420.11

Conserved Domains (2) summary

COG1100
Location:1 → 219

Gem1; GTPase SAR1 family domain [General function prediction only]

pfam03029
Location:8 → 254

ATP_bind_1; Conserved hypothetical ATP binding protein