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    Tmem9b TMEM9 domain family, member B [ Mus musculus (house mouse) ]

    Gene ID: 56786, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tmem9bprovided by MGI
    Official Full Name
    TMEM9 domain family, member Bprovided by MGI
    Primary source
    MGI:MGI:1915254
    See related
    Ensembl:ENSMUSG00000031021 AllianceGenome:MGI:1915254
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D7H11orf15; 2310004K06Rik; ICRFP703B1614Q5.3
    Summary
    Predicted to be located in early endosome membrane and lysosomal membrane. Orthologous to human TMEM9B (TMEM9 domain family member B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in frontal lobe adult (RPKM 34.8), cortex adult (RPKM 34.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Tmem9b in Genome Data Viewer
    Location:
    7 E3; 7 57.47 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (109335043..109351470, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (109735836..109752263, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene cDNA sequence BC051019 Neighboring gene predicted gene, 51493 Neighboring gene achaete-scute family bHLH transcription factor 3 Neighboring gene basic transcription factor 3 pseudogene Neighboring gene nuclear receptor interacting protein 3 Neighboring gene predicted gene, 22822

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (4) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    transmembrane protein 9B
    Names
    ICRFP703N2430Q5.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_020050.1NP_064434.1  transmembrane protein 9B precursor

      See identical proteins and their annotated locations for NP_064434.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ400878
      Consensus CDS
      CCDS21738.1
      UniProtKB/Swiss-Prot
      Q9JJR8
      UniProtKB/TrEMBL
      Q3UI08
      Related
      ENSMUSP00000033333.7, ENSMUST00000033333.13
      Conserved Domains (1) summary
      pfam05434
      Location:58198
      Tmemb_9; TMEM9

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      109335043..109351470 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)