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    PF3D7_1306900 U1 small nuclear ribonucleoprotein A, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 813918, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1306900
    Gene description
    U1 small nuclear ribonucleoprotein A, putative
    Locus tag
    PF3D7_1306900
    See related
    PlasmoDB:PF3D7_1306900; VEuPathDB:PF3D7_1306900
    Gene type
    protein coding
    RNA name
    U1 small nuclear ribonucleoprotein A, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1306900 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    2
    Sequence:
    Chromosome: 13; NC_004331.3 (323472..325032)

    Chromosome 13 - NC_004331.3Genomic Context describing neighboring genes Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene RED-like protein, putative Neighboring gene exosome complex component RRP40, putative Neighboring gene U3 small nucleolar RNA-associated protein 6, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004331.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
    2. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    part_of spliceosomal complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    U1 small nuclear ribonucleoprotein A, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004331.3 Reference assembly

      Range
      323472..325032
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002808955.1 → XP_002809001.1  U1 small nuclear ribonucleoprotein A, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_002809001.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V3E0, A0A024VMX3, A0A024W2V7, A0A024WMI2, A0A024X2R0, A0A0L1I424, A0A0L7KG55, C0H5A4, W4IDK7, W4IYD5, W7EWS2, W7FDC7, W7J8K2, W7JPT6
      Conserved Domains (3) summary
      COG0724
      Location:145 → 360
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12246
      Location:176 → 253
      RRM1_U1A_like; RNA recognition motif 1 (RRM1) found in the U1A/U2B"/SNF protein family
      cd12247
      Location:375 → 445
      RRM2_U1A_like; RNA recognition motif 2 (RRM2) found in the U1A/U2B"/SNF protein family
    Nucleotide Protein
    Heading Accession and Version

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