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    PF3D7_0720000 exosome complex component CSL4, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 2654956, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_0720000
    Gene description
    exosome complex component CSL4, putative
    Locus tag
    PF3D7_0720000
    See related
    PlasmoDB:PF3D7_0720000; VEuPathDB:PF3D7_0720000
    Gene type
    protein coding
    RNA name
    exosome complex component CSL4, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_0720000 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Sequence:
    Chromosome: 7; NC_004328.3 (876795..877500)

    Chromosome 7 - NC_004328.3Genomic Context describing neighboring genes Neighboring gene conserved protein, unknown function Neighboring gene conserved Plasmodium membrane protein, unknown function Neighboring gene pre-rRNA-processing protein ESF2, putative Neighboring gene conserved protein, unknown function

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004328.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Disruption of the RNA exosome reveals the hidden face of the malaria parasite transcriptome. Droll D, et al. RNA Biol, 2018. PMID 30235972, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables RNA exonuclease activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of exosome (RNase complex) IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exosome complex component CSL4, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004328.3 Reference assembly

      Range
      876795..877500
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001349065.1 → XP_001349101.1  exosome complex component CSL4, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001349101.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V9I7, A0A024VJR0, A0A024X3H6, A0A0L1I7I2, A0A0L7KDV3, Q8IBQ2, W4IL87, W4J4A0, W7FHT7, W7G9A2, W7JER4, W7JW47
      Conserved Domains (2) summary
      COG1096
      Location:4 → 191
      Csl4; Exosome complex RNA-binding protein Csl4, contains S1 and Zn-ribbon domains [Translation, ribosomal structure and biogenesis]
      cd05791
      Location:65 → 156
      S1_CSL4; CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
    Nucleotide Protein
    Heading Accession and Version

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